View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20420_low_6 (Length: 486)

Name: NF20420_low_6
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20420_low_6
NF20420_low_6
[»] chr3 (19 HSPs)
chr3 (10-426)||(10359680-10360116)
chr3 (123-426)||(9981141-9981444)
chr3 (252-382)||(10130686-10130816)
chr3 (252-382)||(10372199-10372329)
chr3 (17-114)||(9994758-9994855)
chr3 (148-253)||(10035698-10035804)
chr3 (334-466)||(10264620-10264751)
chr3 (61-114)||(10035899-10035952)
chr3 (400-457)||(11772695-11772752)
chr3 (183-263)||(11778244-11778327)
chr3 (399-433)||(10134711-10134745)
chr3 (416-466)||(10430097-10430147)
chr3 (408-447)||(10093176-10093215)
chr3 (408-447)||(10200058-10200097)
chr3 (398-455)||(10130614-10130671)
chr3 (400-433)||(10130846-10130879)
chr3 (400-433)||(10372136-10372169)
chr3 (398-455)||(10372344-10372401)
chr3 (397-426)||(10584614-10584643)
[»] scaffold0083 (1 HSPs)
scaffold0083 (123-426)||(53693-53996)
[»] chr8 (1 HSPs)
chr8 (275-308)||(11488900-11488933)


Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 426
Target Start/End: Original strand, 10359680 - 10360116
Alignment:
Q  10 gaagcataggttgtaagaattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgac 109  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359680 gaagcagaggttgtaagaatttcggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgac 10359779  T
Q  110 atata-----------------agct---aaaggttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacac 189  Q
     ||||                 ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359780 ttatacagcaaggaagttttttagcttgtaaaggttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacac 10359879  T
Q  190 tttcttgaagagaaatgaaacgaaaaatggatcttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtat 289  Q
    ||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359880 tttctcgaagagaaatgaaacgaaaa-tggatcttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtat 10359978  T
Q  290 ataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgc-n 388  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      
T  10359979 ataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgttgcaa 10360078  T
Q  389 nnnnnnnntgttacaaattaagaatattacaaacccta 426  Q
            ||||||||||||||||||||||||||||||    
T  10360079 acaaaaaatgttacaaattaagaatattacaaacccta 10360116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 123 - 426
Target Start/End: Complemental strand, 9981444 - 9981141
Alignment:
Q  123 gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  9981444 gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacgaaaa-tggatc 9981346  T
Q  223 ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat 322  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9981345 ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat 9981246  T
Q  323 tcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgc-nnnnnnnnntgttacaaattaagaatattacaaa 421  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||||||||    
T  9981245 tcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgttgcaaacaaaaaatgttacaaattaagaatattacaaa 9981146  T
Q  422 cccta 426  Q
    |||||    
T  9981145 cccta 9981141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 252 - 382
Target Start/End: Complemental strand, 10130816 - 10130686
Alignment:
Q  252 attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgag 351  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10130816 atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgag 10130717  T
Q  352 cattcatttaaaattacaaattaagaatcac 382  Q
    |||||| ||||| ||||||||||||||||||    
T  10130716 cattcacttaaagttacaaattaagaatcac 10130686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 10372199 - 10372329
Alignment:
Q  252 attttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatacgag 351  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10372199 atttggaagaaacaaaactgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaattcaacaaatgcatggttttatcatatgag 10372298  T
Q  352 cattcatttaaaattacaaattaagaatcac 382  Q
    |||||| ||||| ||||||||||||||||||    
T  10372299 cattcacttaaagttacaaattaagaatcac 10372329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 9994855 - 9994758
Alignment:
Q  17 aggttgtaagaattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9994855 aggttgtaagaattttggaggcattgtttacgacaaaggtaactatctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacttata 9994758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 148 - 253
Target Start/End: Complemental strand, 10035804 - 10035698
Alignment:
Q  148 atattcattcagatcattctttcagatcaaatatatata--cactttcttgaagagaaatgaaacgaaaaatggatcttaaggtctcaatcaggatcaac 245  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  10035804 atattcattcagatcattctttcagatgaaatatatatatacactttctcgaagagaaatgaaacgaaaa-tggatcttaaggtctcaaccaggatcaac 10035706  T
Q  246 tatatgat 253  Q
    ||||||||    
T  10035705 tatatgat 10035698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 334 - 466
Target Start/End: Complemental strand, 10264751 - 10264620
Alignment:
Q  334 atggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgcnnnnnnnnntgttacaaattaagaatattacaaaccctactgcatt 433  Q
    |||||||||||||| ||||||||  ||||| ||||||||||||||||||||| |          |||||||||||||||||||||||| |||||| ||||    
T  10264751 atggttttatcatatgagcattcgcttaaagttacaaattaagaatcacgtc-cgaaaaaaaaagttacaaattaagaatattacaaatcctactacatt 10264653  T
Q  434 gtactttgtctgaccggatcatgcgggatatta 466  Q
    ||||||||||||| |||||||||| || |||||    
T  10264652 gtactttgtctgatcggatcatgcaggttatta 10264620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 10035952 - 10035899
Alignment:
Q  61 atctcagaagacaagtttaggccttagcagtgaaacttaaaaagatgacatata 114  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||    
T  10035952 atctcagtagacaagttttggccttagcagtgaaacttaaaaagatgacttata 10035899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 457
Target Start/End: Complemental strand, 11772752 - 11772695
Alignment:
Q  400 tacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcatgc 457  Q
    |||||||||||||||||||||| |||| |||||| |||||||||| || |||||||||    
T  11772752 tacaaattaagaatattacaaatcctaatgcattctactttgtctaacgggatcatgc 11772695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 11778244 - 11778327
Alignment:
Q  183 tatacactttcttgaagagaaatgaaacgaa---aaatggatcttaaggtctcaatcaggatcaactatatgattttgaagaaa 263  Q
    ||||||||||||||||| ||||||||| |||   || ||||||||||||||  |  |||| |||||||||||||||||||||||    
T  11778244 tatacactttcttgaagcgaaatgaaatgaattaaactggatcttaaggtcagagccaggttcaactatatgattttgaagaaa 11778327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 433
Target Start/End: Complemental strand, 10134745 - 10134711
Alignment:
Q  399 ttacaaattaagaatattacaaaccctactgcatt 433  Q
    |||||||||||||||||||||||||||||||||||    
T  10134745 ttacaaattaagaatattacaaaccctactgcatt 10134711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 466
Target Start/End: Original strand, 10430097 - 10430147
Alignment:
Q  416 tacaaaccctactgcattgtactttgtctgaccggatcatgcgggatatta 466  Q
    ||||||||||||||||||||| | |||||||||||||||||| || |||||    
T  10430097 tacaaaccctactgcattgtaatctgtctgaccggatcatgcaggttatta 10430147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 10093215 - 10093176
Alignment:
Q  408 aagaatattacaaaccctactgcattgtactttgtctgac 447  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  10093215 aagaatattacaaaccctactgcattgtactctgtatgac 10093176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 10200097 - 10200058
Alignment:
Q  408 aagaatattacaaaccctactgcattgtactttgtctgac 447  Q
    ||||||||||||||||||||||||||||||| ||| ||||    
T  10200097 aagaatattacaaaccctactgcattgtactctgtatgac 10200058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 10130671 - 10130614
Alignment:
Q  398 gttacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcat 455  Q
    |||||||||||  |||||| ||||||||||  ||||||| ||||||||||| ||||||    
T  10130671 gttacaaattataaatattgcaaaccctacaacattgtattttgtctgaccagatcat 10130614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 433
Target Start/End: Complemental strand, 10130879 - 10130846
Alignment:
Q  400 tacaaattaagaatattacaaaccctactgcatt 433  Q
    |||||||||||||||||||||||||||| |||||    
T  10130879 tacaaattaagaatattacaaaccctaccgcatt 10130846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 433
Target Start/End: Original strand, 10372136 - 10372169
Alignment:
Q  400 tacaaattaagaatattacaaaccctactgcatt 433  Q
    |||||||||||||||||||||||||||| |||||    
T  10372136 tacaaattaagaatattacaaaccctaccgcatt 10372169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 455
Target Start/End: Original strand, 10372344 - 10372401
Alignment:
Q  398 gttacaaattaagaatattacaaaccctactgcattgtactttgtctgaccggatcat 455  Q
    |||||||||||  |||||| ||||||||||  ||||||| ||||||||||| ||||||    
T  10372344 gttacaaattataaatattgcaaaccctacaacattgtattttgtctgaccagatcat 10372401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Complemental strand, 10584643 - 10584614
Alignment:
Q  397 tgttacaaattaagaatattacaaacccta 426  Q
    ||||||||||||||||||||||||||||||    
T  10584643 tgttacaaattaagaatattacaaacccta 10584614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 123 - 426
Target Start/End: Original strand, 53693 - 53996
Alignment:
Q  123 gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttcttgaagagaaatgaaacgaaaaatggatc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||    
T  53693 gttttgtcaatgaagaggaatgcagatattcattcagatcattctttcagatcaaatatatatacactttctcaaagagaaatgaaacgaaaa-tggatc 53791  T
Q  223 ttaaggtctcaatcaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat 322  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53792 ttaaggtctcaaccaggatcaactatatgattttgaagaaacaaaattgttaattcaacaaatgtatataggaatatgaatatttagaaccaatattaat 53891  T
Q  323 tcaacaaatgcatggttttatcatacgagcattcatttaaaattacaaattaagaatcacgtcgc-nnnnnnnnntgttacaaattaagaatattacaaa 421  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||          |||||||||||||||||||||||||    
T  53892 tcaacaaatgcatggttttatcatatgagcattcatttaaaattacaaattaagaatcacgttgcaaacaaaaaatgttacaaattaagaatattacaaa 53991  T
Q  422 cccta 426  Q
    |||||    
T  53992 cccta 53996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 11488933 - 11488900
Alignment:
Q  275 attcaacaaatgtatataggaatatgaatattta 308  Q
    |||||||||||||||||||||||| |||||||||    
T  11488933 attcaacaaatgtatataggaataagaatattta 11488900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University