View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_8 (Length: 431)
Name: NF20420_low_8
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 414
Target Start/End: Original strand, 24145581 - 24145998
Alignment:
| Q |
16 |
caaaggtaaggttattagactttggagagtttctgatttcaataggaatagtttgcccttttcaaccatcaa--------------------ccatcaat |
95 |
Q |
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| T |
24145581 |
caaaggtaaggttattagactttggagagtttctgatttcaataggaatagtttgcccttttcaaccatcaatggtaaaacttgctcatcaaccatcaat |
24145680 |
T |
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| Q |
96 |
gtagtgttgcctgaagtatttcgacatatctctaactttttatatgtgtcaaagaggaatccatggaatctcaaagcaaagaaaaatggtttccttgtat |
195 |
Q |
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| T |
24145681 |
gtagtgttgcctgaagtatttcgacatatctctaactttttat--gtgtcaaagaggaatccatggaatctcaaagcaaagaaaaatggtttccttgtat |
24145778 |
T |
|
| Q |
196 |
atggggccttagcataccacataaatcaagacatttttatggaagttctgtcgcaatgtttttctcacctacgatcaacttcgacggagagttatacatc |
295 |
Q |
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| T |
24145779 |
atggggccttagcataccacagaaatcaagacatttttatggaggttctgtcgcaatgtttttctcacctacgatcaacttcgacggagagttatacatc |
24145878 |
T |
|
| Q |
296 |
tgcagatatggaggaaggaataccattgacgtgttctttgatataataagtaatttgaaaaattagcaacttcaaaatagaggaacacagaaattttag- |
394 |
Q |
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| T |
24145879 |
tgcagatatggaggaatgaataccattgacgtgttctttgatataataagtaatttgaaaaattagtaacttcaaaatagaggaacacagaaattttaga |
24145978 |
T |
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| Q |
395 |
tatgtacttatgggttttat |
414 |
Q |
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| T |
24145979 |
aatgtacttatgggttttat |
24145998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 115 - 292
Target Start/End: Original strand, 24150639 - 24150829
Alignment:
| Q |
115 |
ttcgacatatctctaactttt-tatatgtgtcaaagaggaatccatggaatctcaaagcaaagaaaaatggtttccttgtatatggggccttagcatacc |
213 |
Q |
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||||||| |||| ||||| || |||||| |||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24150639 |
ttcgacacatctttaactcttgtatatgggtcaaagaggcatccaaggaatctcaaagcaaagaaaaatagtttccttgtatatggggccttagcatacc |
24150738 |
T |
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| Q |
214 |
acataaatc-------aagacatttttatggaagt-----tctgtcgcaatgtttttctcacctacgatcaacttcgacggagagttatac |
292 |
Q |
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| T |
24150739 |
acagaaatcaagagtgaagacatttttatggaggttttaatttgtcgcaatgtttttctcacctgagatcaacttcgacggagaggtatac |
24150829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 307 - 412
Target Start/End: Original strand, 24150940 - 24151045
Alignment:
| Q |
307 |
aggaaggaataccattgacgtgttctttgatataataagtaatttgaaaaattagcaacttcaaaatagaggaacacagaaattttagtatgtacttatg |
406 |
Q |
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||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
24150940 |
aggaatgaataccattgacgtgttctttgatataacaagtaatttgaaaaattagttacttcaaaatagaggaacacatgaattttacgatgtacttatg |
24151039 |
T |
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| Q |
407 |
ggtttt |
412 |
Q |
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|||||| |
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|
| T |
24151040 |
ggtttt |
24151045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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