View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20420_low_9 (Length: 421)
Name: NF20420_low_9
Description: NF20420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20420_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 34 - 405
Target Start/End: Original strand, 5192790 - 5193155
Alignment:
| Q |
34 |
tggaatgttacaattcctcccttatgtctggaaacacatgcctccctaaattaaaattctggcaaatccttctatttcacagttgaatacacatgtatat |
133 |
Q |
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| T |
5192790 |
tggaatgttacaattcctcccttatgtctggaaacacatgcctccctaaattaaaattctggcaaatccttatatttcacatttgaatacacatgtatat |
5192889 |
T |
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| Q |
134 |
atacattaataccattcacacgtacaattgtttaattaattacatggaaatccatgcaggtatatacgttagtaagaataacaatttccgtgagaataaa |
233 |
Q |
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| T |
5192890 |
atacattaataccattcacacgtacaattgtttaattaattacatggaaatccatgcaggtatatacgttagtaagaatagcaatttccgtgagaataaa |
5192989 |
T |
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| Q |
234 |
gccactaaaagttagaactaggggaatctgtaggttactagaataatatcaaagagttggcgaagaaagttggaaaagaatatataatcgaaccaacatc |
333 |
Q |
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| T |
5192990 |
gccactaaaagttagaactaggggaatctgtaggttactagaataatatcaaagagttggcgaagaaagttggaaaagaatatataatcgaac------c |
5193083 |
T |
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| Q |
334 |
aacatcatgctaaaagccaaaaacgaaaagcaggaaagtgaatactcaatgttgctccattgtatatgtttt |
405 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5193084 |
aacatcatgctaaaagccaaaaacgaaaagcacgaaagtgaatactcaatgttgctccattgtatatgtttt |
5193155 |
T |
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