View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20421_high_2 (Length: 330)
Name: NF20421_high_2
Description: NF20421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20421_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 6221092 - 6220783
Alignment:
| Q |
7 |
tcgaagaatatataaatttttacaattgatctcaattgttaatgtattgc---taaaaagaattccttcaagaaaacctgagtttaattcataggtgaac |
103 |
Q |
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| T |
6221092 |
tcgaacaaaatataaatttttacaattgatctcaattgttaatgtattccacctaaaaagaattccttcaagaaaacctgagtttaattcataggtgaac |
6220993 |
T |
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| Q |
104 |
tattcattgtcggattgtacaaacaaaaagtatactaaagcttatagtagatgaagcatgttctgattatttattttttctaacccactgtaataattta |
203 |
Q |
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| T |
6220992 |
cattcattgtcggattgtacaaacaaaaaatatactaaagcttatagtagatgaagcatgttctgattatttattttttctaacccactgtaataattta |
6220893 |
T |
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| Q |
204 |
ttttttcaatccctctcttcactcacaaaaaccacatggactgcactcatgtctcatgtggcagaagatgatcaagttcttagttagcatggtgggattt |
303 |
Q |
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| T |
6220892 |
ttttttcaatccctctcttcactcacaaaaaccacatggactgcactcatgtctcatgtggcagaagatgatcaagttcttagttagcatggtgggattt |
6220793 |
T |
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| Q |
304 |
gaattattat |
313 |
Q |
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|||||||||| |
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| T |
6220792 |
gaattattat |
6220783 |
T |
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