View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20421_low_1 (Length: 387)
Name: NF20421_low_1
Description: NF20421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20421_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 123 - 375
Target Start/End: Complemental strand, 27523917 - 27523665
Alignment:
| Q |
123 |
tttatttaccaacatttgcaattgaaattcattatttttatgcctacaaattataagttgtcatcaccaagttcttttcaccatgacaggaggtagaaat |
222 |
Q |
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| T |
27523917 |
tttatttaccaacatttgcaattgaaattcattatttttatgcctacaaattataagttgttatcaccaagttcttttcaccatgacaggaggtagaaat |
27523818 |
T |
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| Q |
223 |
aatagagaaatagagattctgaacaatccaaatgccgcaattaggaagccacgattgaaggtagaattttcaacataaacaaatatttgaatgaattaag |
322 |
Q |
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| T |
27523817 |
aatagagaaatagagattctgaacaatccaaatgccgcaattaggaagccacgattgaaggtagaattttcaacataaacaaatatttgaaagaattaag |
27523718 |
T |
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| Q |
323 |
gaataacatcccgtaaaaaagaaggaaattagcaatccaaacaagaataatct |
375 |
Q |
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| T |
27523717 |
gaataacatcccgtaaaaaagaaggaaattagcaatccaaacaagaataatct |
27523665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 27524006 - 27523950
Alignment:
| Q |
17 |
agttaatgactcgttcaaatataagaatattatagtattatacgaataatggagaaaatagcttt |
81 |
Q |
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| T |
27524006 |
agttaatgactcgttcaaatataagaatattata--------cgaataatggagaaaatagcttt |
27523950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 236 - 366
Target Start/End: Complemental strand, 12858395 - 12858268
Alignment:
| Q |
236 |
agattctgaacaatccaaatgccgcaattaggaagccacgattgaaggtagaattttcaacataaacaaatatttgaatgaattaaggaataacatcccg |
335 |
Q |
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| T |
12858395 |
agattctgaacaatccaaatgtcgcaattaggaggccacaat-gatggtagaattttcaacataaacaaatatttgaaagaattaagaaataacatcc-- |
12858299 |
T |
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| Q |
336 |
taaaaaagaaggaaattagcaatccaaacaa |
366 |
Q |
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| T |
12858298 |
tataaaagatggaaattagcaattcaaacaa |
12858268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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