View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20421_low_3 (Length: 298)

Name: NF20421_low_3
Description: NF20421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20421_low_3
NF20421_low_3
[»] chr1 (3 HSPs)
chr1 (1-276)||(24540826-24541101)
chr1 (50-245)||(24541055-24541259)
chr1 (108-182)||(24541212-24541286)
[»] chr5 (3 HSPs)
chr5 (10-276)||(20964155-20964421)
chr5 (50-245)||(20963994-20964201)
chr5 (108-182)||(20963967-20964041)
[»] chr3 (4 HSPs)
chr3 (70-276)||(3175517-3175723)
chr3 (50-276)||(3175677-3175906)
chr3 (50-245)||(3175860-3176061)
chr3 (108-182)||(3176014-3176088)
[»] chr2 (4 HSPs)
chr2 (50-269)||(41524807-41525026)
chr2 (10-276)||(41524434-41524689)
chr2 (50-276)||(41524643-41524853)
chr2 (50-245)||(41524987-41525189)
[»] chr4 (4 HSPs)
chr4 (184-243)||(16591879-16591938)
chr4 (197-243)||(16602449-16602495)
chr4 (184-230)||(35335585-35335631)
chr4 (184-230)||(35335453-35335499)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 24540826 - 24541101
Alignment:
1 tgagccggatgatggtggtgggttggggattttgccgaatgaggagcgagtaaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgat 100  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
24540826 tgagccggaggatggtggtgggttggggattttgcagaatgaggaggaagtaaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgat 24540925  T
101 gatgataatgggtggggggttttgcagggtgacgaggaagtaaaggagtgtgaacatgggaaggggcaggggatggtgagtgatgttggtggcggtgatg 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24540926 gatgataatgggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaacatgggaaggggcaggggatggtgagtgatgttggtggcggtgatg 24541025  T
201 ggttggaggtttggcatggtgaggaggatgtaaaggagtgtgaaccgaaggcttaacaggggaatgagcaggagag 276  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||    
24541026 ggttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaccggagacttaataggggaatgagcaggagag 24541101  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 24541055 - 24541259
Alignment:
50 gtaaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgatg---atgataatgggtggggggttttgcagggtgacgaggaagtaaagg 146  Q
    |||||||  |||||||||||| ||||||||| | ||| |||||||| || ||   ||||| ||| || ||||||||||| |||||||||||| |||||||    
24541055 gtaaaggagtgtgaaccggagacttaataggggaatgagcaggagagtgttgttgatgatgatgagttgggggttttgctgggtgacgaggatgtaaagg 24541154  T
147 agtgtgaacatgggaaggggcaggggatggtgag------tgatgttggtggcggtgatgggttggaggtttggcatggtgaggaggatgtaaaggagtg 240  Q
    || ||||||||||||||| | |||||||||||||      |||||||||||| |||||||||| || ||||| ||| |||||||||||||||||||||||    
24541155 agggtgaacatgggaaggcgtaggggatggtgagtgatgttgatgttggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaaggagtg 24541254  T
241 tgaac 245  Q
    |||||    
24541255 tgaac 24541259  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 24541212 - 24541286
Alignment:
108 atgggtggggggttttgcagggtgacgaggaagtaaaggagtgtgaacatgggaaggggcaggggatggtgagtg 182  Q
    |||||| |||||||| ||||||||| ||||| ||||||||||||||||||| ||||| ||| |||||||||||||    
24541212 atgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtg 24541286  T

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Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 276
Target Start/End: Complemental strand, 20964421 - 20964155
Alignment:
10 tgatggtggtgggttggggattttgccgaatgaggagcgagtaaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgatgatgataat 109  Q
    ||||||||||| |||||||  ||||| || ||||| |  ||||||||| ||||||| ||||| |||||||| ||||| |||||||| |||||||||||||    
20964421 tgatggtggtgagttgggggctttgcagattgagggggaagtaaaggtgtgtgaactggaggtttaataggggcatgagcaggagagtgatgatgataat 20964322  T
110 gggtggggggttttgcagggtgacgaggaagtaaaggagtgtgaacatgggaaggggcaggggatggtgagtgatgttggtggcggtgatgggttggagg 209  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||| ||||||||||||||||    
20964321 gggtggggggttttgcagggtgacgaggatgtaaaggagtgtgaaaatgtgaaggggcgggggatggtgagtgatgttggtggtggtgatgggttggagg 20964222  T
210 tttggcatggtgaggaggatgtaaaggagtgtgaaccgaaggcttaacaggggaatgagcaggagag 276  Q
    ||||||| | |||||| ||||||||||||||||||||| |||||||| ||||| ||| || ||||||    
20964221 tttggcaggatgaggatgatgtaaaggagtgtgaaccggaggcttaataggggcatgtgcgggagag 20964155  T

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Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 50 - 245
Target Start/End: Complemental strand, 20964201 - 20963994
Alignment:
50 gtaaaggtttgtgaaccggaggcttaataggagcatgggcaggaga------atgatgatgataatgggtggggggttttgcagggtgacgaggaagtaa 143  Q
    |||||||  |||||||||||||||||||||| ||||| || |||||      ||||||||||| |||||| |||||||||||||||||||||||| |||     
20964201 gtaaaggagtgtgaaccggaggcttaataggggcatgtgcgggagagtgatgatgatgatgatgatgggttgggggttttgcagggtgacgaggatgtat 20964102  T
144 aggagtgtgaacatgggaaggggcaggggatggtgagtgatgt------tggtggcggtgatgggttggaggtttggcatggtgaggaggatgtaaagga 237  Q
    ||||||||||||||||||||| | |||||||||||| ||||||      |||||| |||||||||| || ||||| ||| ||||||||||||||||||||    
20964101 aggagtgtgaacatgggaaggagtaggggatggtgaatgatgttgatgctggtggtggtgatgggtcgggggtttagcagggtgaggaggatgtaaagga 20964002  T
238 gtgtgaac 245  Q
    ||||||||    
20964001 gtgtgaac 20963994  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 20964041 - 20963967
Alignment:
108 atgggtggggggttttgcagggtgacgaggaagtaaaggagtgtgaacatgggaaggggcaggggatggtgagtg 182  Q
    |||||| |||||||| ||||||||| ||||| ||||||||||||||||||| ||||| ||| |||||||||||||    
20964041 atgggtcgggggtttagcagggtgaggaggatgtaaaggagtgtgaacatgagaaggtgcatgggatggtgagtg 20963967  T

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Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 70 - 276
Target Start/End: Original strand, 3175517 - 3175723
Alignment:
70 ggcttaataggagcatgggcaggagaatgatgatgataatgggtggggggttttgcagggtgacgaggaagtaaaggagtgtgaacatgggaaggggcag 169  Q
    |||||||| || ||||| |||||||| || ||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||||    
3175517 ggcttaatgggggcatgagcaggagagtggtgatgataatgggtgggtggttttttagggtgacgaggatgtaaaggagtgtgaacatgggaaggggcag 3175616  T
170 gggatggtgagtgatgttggtggcggtgatgggttggaggtttggcatggtgaggaggatgtaaaggagtgtgaaccgaaggcttaacaggggaatgagc 269  Q
    |||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    
3175617 gggaaggtgagtgatgttggtggtggtgatgtgttggaggtttggcagggtgaggaggatgtaaaggagtgtgaaacgaaggcttaataggggcatgagc 3175716  T
270 aggagag 276  Q
    |||||||    
3175717 aggagag 3175723  T

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Target: chr3; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 50 - 276
Target Start/End: Original strand, 3175677 - 3175906
Alignment:
50 gtaaaggtttgtgaaccggaggcttaataggagcatgggcaggaga---atgatgatgataatgggtggggggttttgcagggtgacgaggaagtaaagg 146  Q
    |||||||  |||||| || |||||||||||| ||||| ||||||||   ||||||||||| |||||| ||||||||||||||||||||| || |||||||    
3175677 gtaaaggagtgtgaaacgaaggcttaataggggcatgagcaggagagtgatgatgatgatgatgggttgggggttttgcagggtgacgatgatgtaaagg 3175776  T
147 agtgtgaacatgggaaggggcaggggatggtgagtgatgttggtggcggtgatgggttggaggtttggcatggtgaggaggatgtaaaggagtgtgaacc 246  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
3175777 agtgtgaacatgggaaggggcgggggatggtgagtgatgttggtggtggtgatgagttggaggtttggcagggtgaggaggatgtaaaggagtgtgaacc 3175876  T
247 gaaggcttaacaggggaatgagcaggagag 276  Q
    | ||  |||| ||||| |||||||||||||    
3175877 ggagttttaataggggcatgagcaggagag 3175906  T

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Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 3175860 - 3176061
Alignment:
50 gtaaaggtttgtgaaccggaggcttaataggagcatgggcaggaga------atgatgatgataatgggtggggggttttgcagggtgacgaggaagtaa 143  Q
    |||||||  ||||||||||||  |||||||| ||||| ||||||||      ||||||||||| |||||| || ||||||||||| ||||||||| ||||    
3175860 gtaaaggagtgtgaaccggagttttaataggggcatgagcaggagagtgatgatgatgatgatgatgggttggaggttttgcaggatgacgaggatgtaa 3175959  T
144 aggagtgtgaacatgggaaggggcaggggatggtgagtgatgttggtggcggtgatgggttggaggtttggcatggtgaggaggatgtaaaggagtgtga 243  Q
    ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| || ||||| ||| |||| |||||||||||||||||||||    
3175960 aggagtgtgaacatgagaaggagcaagggatggtgagtgatgttggtggcggtgatgggtcgggggtttagcagggtggggaggatgtaaaggagtgtga 3176059  T
244 ac 245  Q
    ||    
3176060 ac 3176061  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 3176014 - 3176088
Alignment:
108 atgggtggggggttttgcagggtgacgaggaagtaaaggagtgtgaacatgggaaggggcaggggatggtgagtg 182  Q
    |||||| |||||||| ||||||||  ||||| ||||||||||||||||||| ||||| ||| | |||||||||||    
3176014 atgggtcgggggtttagcagggtggggaggatgtaaaggagtgtgaacatgagaaggtgcatgtgatggtgagtg 3176088  T

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Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 50 - 269
Target Start/End: Original strand, 41524807 - 41525026
Alignment:
50 gtaaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgatgatgataatgggtggggggttttgcagggtgacgaggaagtaaaggagt 149  Q
    |||||||  |||||||||||||||||||||| ||||| || ||||| |||||| ||| |||||| ||||||||||||||||||||||||  |||||||||    
41524807 gtaaaggagtgtgaaccggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggggttttgcagggtgacgaggatataaaggagt 41524906  T
150 gtgaacatgggaaggggcaggggatggtgagtgatgttggtggcggtgatgggttggaggtttggcatggtgaggaggatgtaaaggagtgtgaaccgaa 249  Q
     |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| | |||||||||||||||||||||||  |    
41524907 atgaacatgggaaggagcaggggatggtgagtggtgttggtggtggtgatgggttggaggtttggtatggtaaagaggatgtaaaggagtgtgaaccaga 41525006  T
250 ggcttaacaggggaatgagc 269  Q
    ||||||| ||||| ||||||    
41525007 ggcttaataggggcatgagc 41525026  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 10 - 276
Target Start/End: Original strand, 41524434 - 41524689
Alignment:
10 tgatggtggtgggttggggattttgccgaatgaggagcgagtaaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgatgatgataat 109  Q
    |||||||||||||||||||  ||||| |  |||||||  ||||||||| ||||||| |||| |||||||||    || |||||||| |||||||||  ||    
41524434 tgatggtggtgggttgggggctttgcagggtgaggaggaagtaaaggtgtgtgaac-ggagacttaatagggatttgagcaggagagtgatgatgacgat 41524532  T
110 gggtggggggttttgcagggtgacgaggaagtaaaggagtgtgaacatgggaaggggcaggggatggtgagtgatgttggtggcggtgatgggttggagg 209  Q
    |||| ||||||||||||||||||| ||          ||| |||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||    
41524533 gggttgggggttttgcagggtgacaag----------agtatgaacatgggaaggagcaggggatggtgagtggtgttggtggtggtgatgggttggagg 41524622  T
210 tttggcatggtgaggaggatgtaaaggagtgtgaaccgaaggcttaacaggggaatgagcaggagag 276  Q
    ||||| | ||| |||||||||||||||||||||||||| |||||||| ||||| |||||| ||||||    
41524623 tttggtagggtaaggaggatgtaaaggagtgtgaaccggaggcttaataggggcatgagctggagag 41524689  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 50 - 276
Target Start/End: Original strand, 41524643 - 41524853
Alignment:
50 gtaaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgatgatgataatgggtggggggttttgcagggtgacgaggaagtaaaggagt 149  Q
    |||||||  |||||||||||||||||||||| ||||| || ||||| |||||| ||| |||||| ||||||||||||||||||| ||          |||    
41524643 gtaaaggagtgtgaaccggaggcttaataggggcatgagctggagagtgatgacgatgatgggttgggggttttgcagggtgacaag----------agt 41524732  T
150 gtgaacatgggaaggggcaggggatggtgagtgatgttggtggcggtgatgggttggaggtttggcatggtgaggaggatgtaaaggagtgtgaaccgaa 249  Q
     |||||||||||||| |||||||||||||||||      |||| ||||||||||||||||||||| | ||| |||||||||||||||||||||||||| |    
41524733 atgaacatgggaaggagcaggggatggtgagtg------gtggtggtgatgggttggaggtttggtagggtaaggaggatgtaaaggagtgtgaaccgga 41524826  T
250 ggcttaacaggggaatgagcaggagag 276  Q
    ||||||| ||||| |||||| ||||||    
41524827 ggcttaataggggcatgagctggagag 41524853  T

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Target: chr2; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 50 - 245
Target Start/End: Original strand, 41524987 - 41525189
Alignment:
50 gtaaaggtttgtgaaccggaggcttaataggagcatgggcaggagaatgatgatgataatgggt-ggggggttttgcagggtgacgaggaagtaaaggag 148  Q
    |||||||  |||||||| ||||||||||||| ||||| ||  |||| |||||| ||| |||||| ||||||||||||||||  ||||| | |||||||||    
41524987 gtaaaggagtgtgaaccagaggcttaataggggcatgagctagagagtgatgacgatgatgggttggggggttttgcagggaaacgagaatgtaaaggag 41525086  T
149 tgtgaacatgggaaggggcaggggatggtgagtgatgt------tggtggcggtgatgggttggaggtttggcatggtgaggaggatgtaaaggagtgtg 242  Q
    |||||||||| ||||||| |||||||||||| ||||||      || ||| |||||||||||||||||||| |   |||||||||||| | ||||||| |    
41525087 tgtgaacatgcgaaggggtaggggatggtgaatgatgttgatgctgatggtggtgatgggttggaggtttgactgtgtgaggaggatgaacaggagtggg 41525186  T
243 aac 245  Q
    |||    
41525187 aac 41525189  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 16591938 - 16591879
Alignment:
184 tgttggtggcggtgatgggttggaggtttggcatggtgaggaggatgtaaaggagtgtga 243  Q
    ||||||||| ||||| ||||||||||||| ||| |||||| ||| |||||||||||||||    
16591938 tgttggtggtggtgacgggttggaggtttagcagggtgagaagggtgtaaaggagtgtga 16591879  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 16602495 - 16602449
Alignment:
197 gatgggttggaggtttggcatggtgaggaggatgtaaaggagtgtga 243  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||    
16602495 gatgggttggaggtttagcatggtgagaagggtgtaaaggagtgtga 16602449  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 35335585 - 35335631
Alignment:
184 tgttggtggcggtgatgggttggaggtttggcatggtgaggaggatg 230  Q
    ||||| || |||||||||||||||||||| |||||||||||||||||    
35335585 tgttgatgacggtgatgggttggaggtttagcatggtgaggaggatg 35335631  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 35335453 - 35335499
Alignment:
184 tgttggtggcggtgatgggttggaggtttggcatggtgaggaggatg 230  Q
    ||||| ||||| ||||||||||||||||| ||||| |||||||||||    
35335453 tgttgatggcgatgatgggttggaggtttagcatgatgaggaggatg 35335499  T

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