View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20422_high_2 (Length: 536)

Name: NF20422_high_2
Description: NF20422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20422_high_2
NF20422_high_2
[»] chr7 (41 HSPs)
chr7 (9-522)||(24282791-24283304)
chr7 (100-309)||(43459455-43459664)
chr7 (158-309)||(40508378-40508530)
chr7 (159-272)||(13564203-13564318)
chr7 (157-285)||(4300011-4300140)
chr7 (100-238)||(11501252-11501389)
chr7 (157-286)||(40509697-40509827)
chr7 (157-286)||(22115127-22115257)
chr7 (157-272)||(22336016-22336133)
chr7 (93-309)||(47454337-47454553)
chr7 (158-309)||(3413532-3413684)
chr7 (149-224)||(30310207-30310282)
chr7 (109-224)||(41079751-41079865)
chr7 (151-309)||(45455330-45455488)
chr7 (110-272)||(22337288-22337449)
chr7 (200-309)||(32602933-32603043)
chr7 (110-234)||(6173369-6173490)
chr7 (102-191)||(44554676-44554764)
chr7 (197-268)||(40738841-40738914)
chr7 (199-272)||(45454075-45454149)
chr7 (158-235)||(4298788-4298865)
chr7 (101-190)||(43098201-43098290)
chr7 (199-286)||(3414839-3414927)
chr7 (98-234)||(9662142-9662276)
chr7 (148-285)||(11344531-11344666)
chr7 (153-272)||(22538808-22538927)
chr7 (199-243)||(24844328-24844372)
chr7 (109-234)||(32256312-32256435)
chr7 (157-309)||(33779050-33779200)
chr7 (199-272)||(43460828-43460902)
chr7 (168-268)||(13562863-13562963)
chr7 (199-309)||(30311474-30311585)
chr7 (199-234)||(33096945-33096980)
chr7 (164-211)||(46201230-46201277)
chr7 (157-233)||(47059185-47059262)
chr7 (199-286)||(24281097-24281186)
chr7 (321-355)||(29229739-29229773)
chr7 (199-233)||(32255066-32255100)
chr7 (315-414)||(39751070-39751171)
chr7 (157-193)||(15992252-15992288)
chr7 (320-368)||(42927023-42927071)
[»] chr4 (50 HSPs)
chr4 (10-309)||(53205300-53205599)
chr4 (112-272)||(10168700-10168862)
chr4 (151-283)||(42871121-42871253)
chr4 (146-281)||(33232651-33232785)
chr4 (109-272)||(7708704-7708867)
chr4 (164-286)||(42810173-42810296)
chr4 (145-272)||(54865142-54865268)
chr4 (158-309)||(49343973-49344126)
chr4 (100-271)||(50546944-50547116)
chr4 (122-287)||(393566-393732)
chr4 (172-309)||(4871342-4871480)
chr4 (103-238)||(5591357-5591494)
chr4 (157-239)||(13166732-13166814)
chr4 (98-224)||(27847764-27847888)
chr4 (103-238)||(48126876-48127013)
chr4 (144-238)||(50548175-50548267)
chr4 (102-287)||(1188865-1189051)
chr4 (199-309)||(2310923-2311034)
chr4 (98-287)||(6348177-6348366)
chr4 (109-283)||(23203869-23204043)
chr4 (98-234)||(1587258-1587394)
chr4 (199-272)||(7707625-7707699)
chr4 (180-234)||(31965911-31965964)
chr4 (100-272)||(33231426-33231599)
chr4 (98-224)||(37884182-37884307)
chr4 (102-287)||(44503587-44503772)
chr4 (174-283)||(54866612-54866720)
chr4 (102-234)||(11438476-11438608)
chr4 (89-224)||(13165581-13165716)
chr4 (98-234)||(13533166-13533300)
chr4 (112-272)||(40792788-40792946)
chr4 (173-235)||(2312462-2312523)
chr4 (199-272)||(10167462-10167536)
chr4 (143-229)||(14524298-14524384)
chr4 (199-272)||(53204398-53204472)
chr4 (165-309)||(390217-390361)
chr4 (164-287)||(37882856-37882981)
chr4 (98-235)||(49342694-49342831)
chr4 (312-388)||(21861081-21861157)
chr4 (312-388)||(21916944-21917020)
chr4 (312-383)||(10304695-10304766)
chr4 (162-209)||(22069336-22069383)
chr4 (199-234)||(23201922-23201957)
chr4 (162-193)||(56085464-56085495)
chr4 (148-238)||(14524805-14524894)
chr4 (100-186)||(34438527-34438612)
chr4 (314-355)||(26863130-26863171)
chr4 (312-357)||(48601138-48601183)
chr4 (173-233)||(1588069-1588128)
chr4 (102-186)||(56000408-56000492)
[»] chr8 (36 HSPs)
chr8 (9-309)||(212523-212828)
chr8 (9-309)||(239426-239731)
chr8 (9-309)||(726146-726451)
chr8 (9-309)||(792781-793086)
chr8 (9-309)||(798647-798952)
chr8 (145-272)||(17338078-17338205)
chr8 (168-272)||(13116367-13116471)
chr8 (100-272)||(42100013-42100185)
chr8 (99-233)||(30786753-30786888)
chr8 (100-286)||(32797161-32797350)
chr8 (200-286)||(28418829-28418916)
chr8 (199-272)||(13117638-13117712)
chr8 (174-283)||(17339530-17339639)
chr8 (199-272)||(32693867-32693941)
chr8 (165-286)||(6397806-6397927)
chr8 (312-393)||(42662712-42662794)
chr8 (102-234)||(30787509-30787640)
chr8 (165-238)||(42872161-42872233)
chr8 (199-286)||(211618-211706)
chr8 (199-286)||(240550-240638)
chr8 (199-286)||(725241-725329)
chr8 (199-286)||(793905-793993)
chr8 (174-272)||(6398478-6398576)
chr8 (151-238)||(26697790-26697876)
chr8 (200-286)||(28420180-28420267)
chr8 (143-224)||(8571565-8571647)
chr8 (199-272)||(26696569-26696643)
chr8 (162-234)||(22551083-22551154)
chr8 (153-193)||(24305159-24305199)
chr8 (175-309)||(42870813-42870947)
chr8 (312-341)||(30114823-30114852)
chr8 (173-272)||(42098600-42098698)
chr8 (313-345)||(12328779-12328811)
chr8 (157-193)||(24192626-24192662)
chr8 (313-345)||(30464397-30464429)
chr8 (164-192)||(31845764-31845792)
[»] chr5 (22 HSPs)
chr5 (162-286)||(22308767-22308892)
chr5 (98-287)||(325090-325279)
chr5 (98-209)||(32757926-32758038)
chr5 (157-272)||(33173923-33174039)
chr5 (115-272)||(30912084-30912241)
chr5 (153-238)||(33172625-33172709)
chr5 (173-309)||(39603853-39603989)
chr5 (199-272)||(22307545-22307619)
chr5 (199-272)||(39605474-39605548)
chr5 (157-272)||(22047769-22047887)
chr5 (200-272)||(30910778-30910851)
chr5 (168-286)||(22049111-22049229)
chr5 (143-192)||(9169704-9169753)
chr5 (203-287)||(30859181-30859266)
chr5 (201-313)||(27705323-27705436)
chr5 (153-193)||(9220419-9220459)
chr5 (312-342)||(38826061-38826091)
chr5 (313-346)||(14958919-14958952)
chr5 (173-238)||(15548310-15548373)
chr5 (165-193)||(1102735-1102763)
chr5 (313-345)||(7065662-7065694)
chr5 (312-368)||(16829255-16829311)
[»] scaffold0019 (2 HSPs)
scaffold0019 (100-296)||(63037-63234)
scaffold0019 (200-286)||(61874-61961)
[»] chr2 (29 HSPs)
chr2 (91-209)||(2277366-2277484)
chr2 (100-309)||(32470482-32470691)
chr2 (98-209)||(34147237-34147349)
chr2 (98-287)||(28562714-28562903)
chr2 (122-286)||(11315956-11316120)
chr2 (98-268)||(6032218-6032389)
chr2 (199-272)||(18617011-18617085)
chr2 (199-272)||(29219422-29219496)
chr2 (199-272)||(29332721-29332795)
chr2 (165-286)||(43033105-43033226)
chr2 (100-283)||(1083014-1083197)
chr2 (89-184)||(7436591-7436686)
chr2 (154-207)||(7753486-7753539)
chr2 (158-286)||(12359643-12359772)
chr2 (199-283)||(18615542-18615627)
chr2 (199-283)||(29220881-29220966)
chr2 (199-283)||(29334180-29334265)
chr2 (162-309)||(17460653-17460800)
chr2 (201-286)||(17459276-17459362)
chr2 (200-272)||(34468995-34469068)
chr2 (201-238)||(44192453-44192490)
chr2 (157-234)||(43034433-43034511)
chr2 (200-272)||(1085394-1085465)
chr2 (199-272)||(6030642-6030716)
chr2 (167-209)||(35903609-35903651)
chr2 (321-366)||(32965705-32965750)
chr2 (60-185)||(34166998-34167123)
chr2 (320-360)||(1220817-1220857)
chr2 (320-368)||(4860277-4860325)
[»] chr1 (31 HSPs)
chr1 (98-309)||(14470856-14471068)
chr1 (100-272)||(16963871-16964043)
chr1 (157-309)||(15072753-15072906)
chr1 (101-309)||(24499563-24499771)
chr1 (199-272)||(15234046-15234120)
chr1 (165-309)||(16123287-16123432)
chr1 (98-224)||(41873875-41874001)
chr1 (90-193)||(46110398-46110501)
chr1 (98-272)||(30535574-30535748)
chr1 (109-234)||(27814368-27814493)
chr1 (158-235)||(14477755-14477832)
chr1 (200-272)||(15232789-15232862)
chr1 (164-235)||(41872651-41872722)
chr1 (157-314)||(23091346-23091505)
chr1 (157-231)||(35943410-35943485)
chr1 (162-224)||(44999430-44999492)
chr1 (153-234)||(46467222-46467303)
chr1 (102-186)||(48492853-48492936)
chr1 (161-219)||(46318584-46318642)
chr1 (199-272)||(49802900-49802974)
chr1 (312-355)||(44661797-44661840)
chr1 (162-272)||(51042311-51042421)
chr1 (143-193)||(51445706-51445757)
chr1 (159-193)||(5613049-5613083)
chr1 (159-193)||(26286529-26286563)
chr1 (197-234)||(15071418-15071455)
chr1 (152-193)||(32693366-32693407)
chr1 (47-120)||(51299470-51299543)
chr1 (313-353)||(15497548-15497588)
chr1 (201-272)||(16965134-16965206)
chr1 (28-84)||(49801842-49801898)
[»] chr3 (34 HSPs)
chr3 (110-272)||(27837957-27838118)
chr3 (100-285)||(38240930-38241114)
chr3 (143-312)||(18442249-18442415)
chr3 (143-312)||(19487323-19487489)
chr3 (159-268)||(53614237-53614348)
chr3 (98-220)||(24403329-24403451)
chr3 (100-272)||(35372066-35372237)
chr3 (93-285)||(53194770-53194962)
chr3 (143-235)||(40364394-40364486)
chr3 (174-308)||(18458637-18458772)
chr3 (100-309)||(40244187-40244395)
chr3 (200-286)||(50809444-50809531)
chr3 (200-286)||(50866331-50866418)
chr3 (151-224)||(36175349-36175421)
chr3 (164-272)||(42684913-42685022)
chr3 (98-314)||(53624267-53624482)
chr3 (201-272)||(10732136-10732208)
chr3 (98-272)||(10730922-10731096)
chr3 (100-309)||(34818086-34818295)
chr3 (200-286)||(50810840-50810927)
chr3 (200-286)||(50864937-50865024)
chr3 (100-178)||(3209873-3209951)
chr3 (198-287)||(18197169-18197259)
chr3 (199-272)||(53612908-53612982)
chr3 (148-209)||(20288178-20288239)
chr3 (143-219)||(20336606-20336682)
chr3 (22-181)||(21074108-21074267)
chr3 (173-286)||(12107960-12108076)
chr3 (202-286)||(37736089-37736174)
chr3 (102-209)||(20314672-20314779)
chr3 (198-235)||(41544737-41544774)
chr3 (312-368)||(11534809-11534865)
chr3 (102-186)||(21128046-21128130)
chr3 (313-345)||(37914561-37914593)
[»] chr6 (21 HSPs)
chr6 (100-272)||(29380228-29380400)
chr6 (109-272)||(23397270-23397433)
chr6 (145-283)||(6701406-6701544)
chr6 (100-272)||(17839046-17839218)
chr6 (157-238)||(32506989-32507070)
chr6 (168-286)||(232199-232316)
chr6 (173-272)||(23392251-23392350)
chr6 (199-272)||(2687267-2687341)
chr6 (174-283)||(6702852-6702960)
chr6 (199-309)||(6452516-6452627)
chr6 (198-272)||(17837653-17837728)
chr6 (102-272)||(29722700-29722871)
chr6 (196-272)||(2687926-2688003)
chr6 (157-238)||(12669795-12669876)
chr6 (312-368)||(3846461-3846517)
chr6 (199-238)||(6452356-6452395)
chr6 (143-218)||(15728822-15728897)
chr6 (313-354)||(2271193-2271234)
chr6 (199-283)||(18346755-18346840)
chr6 (168-205)||(32505773-32505810)
chr6 (250-314)||(34024121-34024184)
[»] scaffold0031 (2 HSPs)
scaffold0031 (157-309)||(123969-124121)
scaffold0031 (199-309)||(125238-125349)
[»] scaffold1251 (1 HSPs)
scaffold1251 (155-234)||(1046-1125)
[»] scaffold0077 (1 HSPs)
scaffold0077 (200-309)||(54191-54301)
[»] scaffold0201 (1 HSPs)
scaffold0201 (157-224)||(21213-21280)
[»] scaffold0034 (1 HSPs)
scaffold0034 (100-191)||(109652-109743)
[»] scaffold0472 (1 HSPs)
scaffold0472 (174-225)||(726-776)
[»] scaffold0219 (1 HSPs)
scaffold0219 (157-192)||(8153-8188)
[»] scaffold0078 (1 HSPs)
scaffold0078 (199-238)||(18884-18923)
[»] scaffold0777 (1 HSPs)
scaffold0777 (313-351)||(4743-4781)
[»] scaffold0118 (1 HSPs)
scaffold0118 (162-235)||(43541-43616)


Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 9 - 522
Target Start/End: Original strand, 24282791 - 24283304
Alignment:
Q  9 agatgaagaaagcaaaaataaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtttatattttaaaacaaagatcaaag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24282791 agatgaagaaagcaaaaataaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtttatattttaaaacaaagatcaaag 24282890  T
Q  109 ggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttattt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24282891 ggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttattt 24282990  T
Q  209 ggcaaacggaggaaaatgtgagggactaaagcgcctgttttttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataa 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24282991 ggcaaacggaggaaaatgtgagggactaaagcgcctgttttttaattgtggaaccaaaatgaaaatctgaaattatttggagaaccaacggatcaaataa 24283090  T
Q  309 gtcttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacattgaatatttagtgaacctaaacaaatgttttacttataaat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24283091 gtcttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacattgaatatttagtgaacctaaacaaatgttttacttataaat 24283190  T
Q  409 gtgactggagagagtagatgttagcatttcccgataaacaaatgtaccactcattttgtaacatgaatgaatagcataaaaacttgaatgaatgcatata 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24283191 gtgactggagagagtagatgttagcatttcccgataaacaaatgtaccactcattttgtaacatgaatgaatagcatagaaacttgaatgaatgcatata 24283290  T
Q  509 ctagtagaagtata 522  Q
    ||||||||||||||    
T  24283291 ctagtagaagtata 24283304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 43459664 - 43459455
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| |||| || ||||| | ||||| | ||| ||||||||||||||||||||||| |||||| |||||| ||       
T  43459664 agatcgaatggttaaaattaacaaaattaataaggtctacgatgtaccatttttaaggttgatccaccatagacatttggagttaaacttaacagcc-ga 43459566  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacg 298  Q
    |||||||||||||||||||||||||  ||||||||| || |||  ||||| |||||||||| ||||||||||||   ||||||||||| | | || || |    
T  43459565 gatttatttggcaaacggaggaaaacatgagggacttaaacgcacgttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggactaatg 43459466  T
Q  299 gatcaaataag 309  Q
    |||||||||||    
T  43459465 gatcaaataag 43459455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 158 - 309
Target Start/End: Complemental strand, 40508530 - 40508378
Alignment:
Q  158 ttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattg 256  Q
    ||||||||||||||||||||||| ||||| |||||||| | ||||||||||||| |||||||||||| |||||||||| || ||   ||||| |||||||    
T  40508530 ttgatccaccatagacatttgggattaaacttaacaccgaaggatttatttggctaacggaggaaaaagtgagggacttaaacgtacgttttattaattg 40508431  T
Q  257 tggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    ||| || |||||||||   ||||||||||| | | ||||  ||||||||||||    
T  40508430 tgggacaaaaatgaaaacttgaaattatttaggggaccattggatcaaataag 40508378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 13564203 - 13564318
Alignment:
Q  159 tgatccaccatagacatt---tggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaat 254  Q
    ||||||||||||||||||   |||||||||| |||||  |   |||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||    
T  13564203 tgatccaccatagacattatttggggttaaacttaacgtcg--ggatttatttggcaaacggaggaaaatgtgagggactaaaacgccagttttattaat 13564300  T
Q  255 tgtggaaccaaaatgaaa 272  Q
    ||||| ||||||||||||    
T  13564301 tgtgggaccaaaatgaaa 13564318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 157 - 285
Target Start/End: Original strand, 4300011 - 4300140
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaatt 255  Q
    |||||||||| |||||| |||||||||||| |||||||| |  |||||||||||||||| |||||||| |||||||||| || ||   ||||| ||||||    
T  4300011 gttgatccactatagacgtttggggttaaacttaacaccgaaagatttatttggcaaacagaggaaaaagtgagggacttaaacgtacgttttattaatt 4300110  T
Q  256 gtggaaccaaaatgaaagtctgaaattatt 285  Q
    |||| ||||||||||||   ||||||||||    
T  4300111 gtgggaccaaaatgaaaacttgaaattatt 4300140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 11501389 - 11501252
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| |||| || ||| | | ||||  | ||| |||| |||||||||||||||||  |||||||||||||  |  |    
T  11501389 agatcgaatggttaaaattaacaaaattaataaggtctacaatgaaccacttttaaggttggtccaccatagacatttgaagttaaagttaacagtcg-g 11501291  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    ||||||||||||||| ||||||||| |||||||||||||    
T  11501290 gatttatttggcaaatggaggaaaaggtgagggactaaa 11501252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 157 - 286
Target Start/End: Original strand, 40509697 - 40509827
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaatt 255  Q
    |||| ||||| ||||||||||||||||||| |||||||| |  ||||||||||| ||||||||||||| |||||| ||| || ||   ||||| ||||||    
T  40509697 gttggtccactatagacatttggggttaaacttaacaccgaatgatttatttggtaaacggaggaaaaagtgaggaacttaaacgtacgttttattaatt 40509796  T
Q  256 gtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||| ||||||||||||   |||||||||||    
T  40509797 gtgggaccaaaatgaaaacttgaaattattt 40509827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 157 - 286
Target Start/End: Original strand, 22115127 - 22115257
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaatt 255  Q
    |||| ||||| ||||||||||||||||||| |||||||| |  |||||||||||  |||||||||||| |||||| ||| || ||   ||||| ||||||    
T  22115127 gttggtccactatagacatttggggttaaacttaacaccgaangatttatttggtnaacggaggaaaaagtgaggaacttaaacgtacgttttattaatt 22115226  T
Q  256 gtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||| ||||||||||||   |||||||||||    
T  22115227 gtgggaccaaaatgaaaacttgaaattattt 22115257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 22336133 - 22336016
Alignment:
Q  157 gttgatccaccataga--catttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaa 253  Q
    |||||||||||||||   |||||||||||||| ||||||  |  ||||||||||||||||| |||||||| ||||||||||||| |||| | ||| ||||    
T  22336133 gttgatccaccatagcatcatttggggttaaacttaacattcg-ggatttatttggcaaactgaggaaaaggtgagggactaaaacgccatttttattaa 22336035  T
Q  254 ttgtggaaccaaaatgaaa 272  Q
    |||||| ||||||||||||    
T  22336034 ttgtgggaccaaaatgaaa 22336016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 309
Target Start/End: Complemental strand, 47454553 - 47454337
Alignment:
Q  93 aaaacaaagatcaaagggttaaaattaacaaaattgataaagtttacgacggacca-tctataatgttgatccaccatagacatttggggttaaagttaa 191  Q
    |||| ||| |||||| |||||||||||| |||||| |||| || ||||| |||||| ||| ||| |||| || ||||||||||||| | |||||||||||    
T  47454553 aaaaaaaaaatcaaacggttaaaattaataaaattaataaggtctacgatggaccactct-taaggttggtctaccatagacatttagagttaaagttaa 47454455  T
Q  192 cacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggag 290  Q
     |  |  |||||||||||||||||| || ||||  |||||||| |||  |   ||||| |||||||||| |||||||||||||  ||||||||||||  |    
T  47454454 tagtc-gggatttatttggcaaacgaagaaaaacttgagggaccaaaatgtacgttttattaattgtgggaccaaaatgaaagcttgaaattatttgagg 47454356  T
Q  291 aaccaacggatcaaataag 309  Q
     ||||  ||||||||||||    
T  47454355 gaccactggatcaaataag 47454337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 158 - 309
Target Start/End: Complemental strand, 3413684 - 3413532
Alignment:
Q  158 ttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattg 256  Q
    |||||||||||||||||| ||  |||||| ||||||   | ||||||||||||||||| ||| |||| ||||||||||||| |||| | ||| |||||||    
T  3413684 ttgatccaccatagacatctgaagttaaacttaacagttagggatttatttggcaaacagagtaaaaggtgagggactaaaacgccatttttattaattg 3413585  T
Q  257 tggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    | | ||||||||||||    |||||||||| ||| |||||  |||| ||||||    
T  3413584 taggaccaaaatgaaaacacgaaattatttagaggaccaaacgatctaataag 3413532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 149 - 224
Target Start/End: Complemental strand, 30310282 - 30310207
Alignment:
Q  149 tctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaa 224  Q
    |||||||||||  ||||||||||||||||||||||||  ||||||  |  ||||||||||||||||||||||||||    
T  30310282 tctataatgttagtccaccatagacatttggggttaactttaacagtctgggatttatttggcaaacggaggaaaa 30310207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 109 - 224
Target Start/End: Original strand, 41079751 - 41079865
Alignment:
Q  109 ggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttattt 208  Q
    ||||||||| ||||||||| |||| || ||||| ||||||  | |||||||| ||||||||||| |||||| ||||||||||||    | ||||||||||    
T  41079751 ggttaaaatcaacaaaattaataaggtctacgatggaccacttttaatgttgttccaccatagatatttggagttaaagttaac-ggtagggatttattt 41079849  T
Q  209 ggcaaacggaggaaaa 224  Q
     |||||||||||||||    
T  41079850 agcaaacggaggaaaa 41079865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 151 - 309
Target Start/End: Original strand, 45455330 - 45455488
Alignment:
Q  151 tataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt- 249  Q
    |||||||||| | ||| |||| ||||| |||||||| |||||| ||||| ||||||||||||||||||| |||| ||||||||  |||  |   |||||     
T  45455330 tataatgttggtacactataggcatttagggttaaacttaacagccatg-atttatttggcaaacggagaaaaaagtgagggatcaaaatgtacgtttta 45455428  T
Q  250 ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    |||||||||| |||||||||||| | |||||||| ||   | |||| |||||||||||||    
T  45455429 ttaattgtgggaccaaaatgaaaatttgaaattaattaagggaccatcggatcaaataag 45455488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 22337288 - 22337449
Alignment:
Q  110 gttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttg 209  Q
    |||||||||||||||||| |||| || ||||  | || |  | ||| |||| |||||||||||||||||  |||||| |||||   || |||||||||||    
T  22337288 gttaaaattaacaaaattaataaggtctacggtgtactacatttaaggttggtccaccatagacatttgaagttaaatttaacggtca-ggatttatttg 22337386  T
Q  210 gcaaacggaggaaaatgtgagggactaaagcgcctgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||||| ||||||| ||   | | ||| |||||||||| | ||||||||||    
T  22337387 gcaaacggaggaaaatgtaagggactgaatgccatttttattaattgtgggatcaaaatgaaa 22337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 32603043 - 32602933
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacg 298  Q
    |||||||||||||||||||| |||| ||||||||||||| ||   ||||| |||||| ||| |||||||| |||   |||||||||||| || ||||| |    
T  32603043 gatttatttggcaaacggagtaaaaagtgagggactaaaacgtacgttttattaattatgggaccaaaataaaaacttgaaattatttgaaggaccaatg 32602944  T
Q  299 gatcaaataag 309  Q
    |||||||||||    
T  32602943 gatcaaataag 32602933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 6173369 - 6173490
Alignment:
Q  110 gttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttg 209  Q
    ||||| |||||||||||| |||| || ||||| ||||||  | ||| |||| ||||| ||||| |||| | ||||||||||| |   |||||||||||||    
T  6173369 gttaagattaacaaaatt-ataaggtctacgatggaccacttttaaagttggtccactatagatatttagagttaaagttaatag--atggatttatttg 6173465  T
Q  210 gcaaacggaggaaaatgtgagggac 234  Q
    ||||||||||||||| |||||||||    
T  6173466 gcaaacggaggaaaaagtgagggac 6173490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 191
Target Start/End: Original strand, 44554676 - 44554764
Alignment:
Q  102 atcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaa 191  Q
    ||||| |||| ||||||||||||||| ||||  | ||||  ||||||| |||||||||| |||||||||||||||||| |||||||||||    
T  44554676 atcaaggggtcaaaattaacaaaattaataagatctacggtggaccat-tataatgttggtccaccatagacatttggagttaaagttaa 44554764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 40738841 - 40738914
Alignment:
Q  197 atggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt--ttaattgtggaaccaaaat 268  Q
    ||||||||||||||||||| ||| |||| ||||||||||||| ||||||||||  |||||| ||| ||||||||    
T  40738841 atggatttatttggcaaacagagcaaaaagtgagggactaaaacgcctgtttttattaattatgggaccaaaat 40738914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 45454149 - 45454075
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||||||||||||| ||||||||||||| ||  |||||| |||||| ||  ||||||||||||    
T  45454149 ggatttatttggcaaacggaggaaaaagtgagggactaaaacgtatgttttattaattatgagaccaaaatgaaa 45454075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 4298865 - 4298788
Alignment:
Q  158 ttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggact 235  Q
    ||||||||||||| || ||| |||||||| |||||| | |  |||||||||||||||| |||||||| ||||||||||    
T  4298865 ttgatccaccatacacgtttagggttaaacttaacatcaaatgatttatttggcaaacagaggaaaaagtgagggact 4298788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 43098201 - 43098290
Alignment:
Q  101 gatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagtta 190  Q
    ||||||||| ||||||||||  ||||| |||||||||| |  ||| |||| | ||||||| |||||| ||||||||| ||||||||||||    
T  43098201 gatcaaaggattaaaattaaataaattaataaagtttatggtggatcatcaacaatgttggtccaccttagacattttgggttaaagtta 43098290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 3414839 - 3414927
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||||||| ||||||||| |||| |||||||| |||| | ||| |||||| ||| ||||||||||||   |||||||||||    
T  3414839 ggatttatttggcaaatggaggaaaaagtgaaggactaaaacgccatttttattaattatgggaccaaaatgaaaacatgaaattattt 3414927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 9662142 - 9662276
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    |||||||||| |||||||||| | |||||| |||| || || |  |||| ||||||||||||| |||||||||||||||||  |||||| ||||||  |     
T  9662142 aaagatcaaatggttaaaattga-aaaattaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaaatttaacagtc- 9662239  T
Q  198 tggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    |||||||||||| |  ||||||  ||| |||||||||    
T  9662240 tggatttatttgaccgacggagacaaacgtgagggac 9662276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 285
Target Start/End: Complemental strand, 11344666 - 11344531
Alignment:
Q  148 atctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtt 247  Q
    |||||||||||||  |||||||||| ||||| ||||||| |||||||| |  |||||||||| ||||||||| |||   ||| ||||| || ||   |||    
T  11344666 atctataatgttggaccaccatagatatttgaggttaaacttaacaccgaaagatttatttgacaaacggagaaaa---tgaaggacttaaacgtacgtt 11344570  T
Q  248 tt-ttaattgtggaaccaaaatgaaagtctgaaattatt 285  Q
    || |||||||||| ||||||||||||   ||||||||||    
T  11344569 ttattaattgtgggaccaaaatgaaaacttgaaattatt 11344531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 272
Target Start/End: Original strand, 22538808 - 22538927
Alignment:
Q  153 taatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcg-cctgtttttt 251  Q
    |||||||| | ||||||||| |||||| ||||||||||||   |  | ||||||||||||||||||||||||  |||||||||||| || | | ||| ||    
T  22538808 taatgttggtacaccatagatatttggagttaaagttaaccgtcgag-atttatttggcaaacggaggaaaagatgagggactaaaacgtcatttttatt 22538906  T
Q  252 aattgtggaaccaaaatgaaa 272  Q
    |||||||| ||||||| ||||    
T  22538907 aattgtgggaccaaaaagaaa 22538927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 24844372 - 24844328
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc 243  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||    
T  24844372 ggatttatttggcaaacggaagaaaatgtgagggactaaaacgcc 24844328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 32256312 - 32256435
Alignment:
Q  109 ggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatgg-atttatt 207  Q
    ||||||||||||||||||   ||| |||||| | ||||||  | |||||||| |||||||||||||||||  ||||||||||  ||   ||| |||||||    
T  32256312 ggttaaaattaacaaaatat-taaggtttacaatggaccacttttaatgttggtccaccatagacatttgaagttaaagtta--acggttggaatttatt 32256408  T
Q  208 tggcaaacggaggaaaatgtgagggac 234  Q
    ||||||| ||||||||| |||||||||    
T  32256409 tggcaaatggaggaaaaagtgagggac 32256435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 309
Target Start/End: Original strand, 33779050 - 33779200
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaatt 255  Q
    |||| ||||||||||||||||| ||||||| |||||| |||  |||||||| ||    |||||||||| | ||||||||||| ||   ||||| ||||||    
T  33779050 gttggtccaccatagacatttgtggttaaacttaacagccaaagatttattggg---gcggaggaaaaagcgagggactaaaacgtgagttttattaatt 33779146  T
Q  256 gtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    ||||  |||||||||||   ||||||||||| | | || || ||||||||||||    
T  33779147 gtggggccaaaatgaaaacttgaaattatttaggggactaatggatcaaataag 33779200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 43460828 - 43460902
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||| ||||||||| |||||||||||||  |   ||||| |||||||||| ||||||||||||    
T  43460828 ggatttatttggcaaatggaggaaaaagtgagggactaaaatgtacgttttattaattgtgggaccaaaatgaaa 43460902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 13562963 - 13562863
Alignment:
Q  168 atagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaa 266  Q
    |||||||||||  |||||||||||||  |  |||||||||||| |||| ||| |||||||||||||||||| |||| | ||| ||| |||||| ||||||    
T  13562963 atagacatttgaagttaaagttaacaatcg-ggatttatttggtaaacagagaaaaatgtgagggactaaaacgccatttttattacttgtgggaccaaa 13562865  T
Q  267 at 268  Q
    ||    
T  13562864 at 13562863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 30311474 - 30311585
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaac 297  Q
    ||||||| ||||| ||| ||| ||||  ||||||||| || ||  |||||| |||||||||| |||||||||||| | ||||||||||| | | || ||     
T  30311474 ggatttaattggctaacagagaaaaaaatgagggacttaaacgtatgttttattaattgtgggaccaaaatgaaaatttgaaattatttaggggactaat 30311573  T
Q  298 ggatcaaataag 309  Q
    ||||||||||||    
T  30311574 ggatcaaataag 30311585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 33096980 - 33096945
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    |||||||||||||||||||||||||| |||||||||    
T  33096980 ggatttatttggcaaacggaggaaaaagtgagggac 33096945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 46201277 - 46201230
Alignment:
Q  164 caccatagacatttggggttaaagttaacacccatggatttatttggc 211  Q
    ||||||||||||||||||||||| ||||||  | ||||||||||||||    
T  46201277 caccatagacatttggggttaaacttaacaggcttggatttatttggc 46201230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 47059262 - 47059185
Alignment:
Q  157 gttgatccaccatagacatttgg--ggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgaggga 233  Q
    |||| |||||||||||| |||||  ||||||| |||||   || |||||||||||||||||||||||||| ||||||||    
T  47059262 gttgctccaccatagacttttggagggttaaacttaacggtca-ggatttatttggcaaacggaggaaaaagtgaggga 47059185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 24281186 - 24281097
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt--ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    ||||||||||||| ||||||  ||||  |||||||||||| ||| ||||||  |||||||||| |||||||| |||   |||||||||||    
T  24281186 ggatttatttggcgaacggataaaaaattgagggactaaaacgcttgtttttattaattgtgggaccaaaataaaaacatgaaattattt 24281097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 355
Target Start/End: Complemental strand, 29229773 - 29229739
Alignment:
Q  321 ttcattgaataactaatgtatctgacatatatata 355  Q
    |||||||||||||||||||||||||| ||||||||    
T  29229773 ttcattgaataactaatgtatctgacctatatata 29229739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 233
Target Start/End: Complemental strand, 32255100 - 32255066
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgaggga 233  Q
    |||||||||||||||||||||||||| ||||||||    
T  32255100 ggatttatttggcaaacggaggaaaaagtgaggga 32255066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 39751171 - 39751070
Alignment:
Q  315 tttaaattcattgaataactaatgtatctgacatatatataaaccggatacattgaatatttagtgaacctaaacaaatg--ttttacttataaatgtga 412  Q
    ||||||||||||||||||||||||||| | ||  ||||||| |||  |||||||  ||||||| |||| ||||| |  ||  |||||||||||||| |||    
T  39751171 tttaaattcattgaataactaatgtattttaccaatatatagaccatatacattagatatttaatgaatctaaaaagttgttttttacttataaatatga 39751072  T
Q  413 ct 414  Q
    ||    
T  39751071 ct 39751070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Complemental strand, 15992288 - 15992252
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaaca 193  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  15992288 gttggtccaccatagacatttgaggttaaagttaaca 15992252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 42927023 - 42927071
Alignment:
Q  320 attcattgaataactaatgtatctgacatatatataaaccggatacatt 368  Q
    |||||||||||||||||||||| |||  |||||||||| || |||||||    
T  42927023 attcattgaataactaatgtatttgatctatatataaatcgaatacatt 42927071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 309
Target Start/End: Original strand, 53205300 - 53205599
Alignment:
Q  10 gatgaagaaagcaaaaataaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtttatattttaaaacaaagatcaaagg 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  53205300 gatgaagaaagcaaagataaattagttgtaggtggtccactgtaagttaaaatagacctgcacaatccaatggtttatattttaaaa-aaagatcaaagg 53205398  T
Q  110 gttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttg 209  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  53205399 gttaaaattaacaaaattgataaagtctacggcggaccatctataatgttgatccaccatagacatttgagattaaagttaacacccatggatttatttg 53205498  T
Q  210 gcaaacggaggaaaatgtgagggactaaagcgcct-gttttttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataa 308  Q
    ||||||||||||||| ||||||||||||| |||||  |||||||||||||| || ||||||||| ||||||||||||||| | || || | |||||||||    
T  53205499 gcaaacggaggaaaaagtgagggactaaaacgcctatttttttaattgtgggacgaaaatgaaaatctgaaattatttgggggactaatgaatcaaataa 53205598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 112 - 272
Target Start/End: Original strand, 10168700 - 10168862
Alignment:
Q  112 taaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttgggg-ttaaagttaacacccatggatttatttgg 210  Q
    |||||||||  ||||| |||| || ||||  |||||||||||||||||| |||||||||||||||||||| |||||||||||   |||||||||||||||    
T  10168700 taaaattaaataaattaataaggtgtacggtggaccatctataatgttggtccaccatagacatttgggggttaaagttaactgtcatggatttatttgg 10168799  T
Q  211 caaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  10168800 caaacggaggaaaatgtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaa 10168862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 151 - 283
Target Start/End: Complemental strand, 42871253 - 42871121
Alignment:
Q  151 tataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt- 249  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||  || |||||||||||||||||||||||||| ||||||||| ||| ||   |||||     
T  42871253 tataatgttgatccaccgtagacatttggaattaaacttaacagtca-ggatttatttggcaaacggaggaaaaagtgagggaccaaaacgtacgtttta 42871155  T
Q  250 ttaattgtggaaccaaaatgaaagtctgaaatta 283  Q
    |||||||||| | |||||||||| | ||||||||    
T  42871154 ttaattgtgggatcaaaatgaaaatttgaaatta 42871121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 146 - 281
Target Start/End: Original strand, 33232651 - 33232785
Alignment:
Q  146 ccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-t 244  Q
    ||||||||||||||| ||||| ||||||||||| | |||||||||||    | | |||||||||||||||||||||||||||||||||||||| |||| |    
T  33232651 ccatctataatgttggtccacaatagacatttgag-ttaaagttaacggaaaag-atttatttggcaaacggaggaaaatgtgagggactaaaacgccat 33232748  T
Q  245 gttttttaattgtggaaccaaaatgaaagtctgaaat 281  Q
     ||| |||||||||| |||||||| ||| | ||||||    
T  33232749 ttttattaattgtgggaccaaaataaaaatatgaaat 33232785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 109 - 272
Target Start/End: Original strand, 7708704 - 7708867
Alignment:
Q  109 ggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttattt 208  Q
    ||||| ||||||||||||| |||| || || || | ||||  | ||| |||| ||||||||||| |||| | ||||||||||||||    ||||||||||    
T  7708704 ggttagaattaacaaaattaataaggtctatgatgtaccacttttaaggttggtccaccatagatatttagagttaaagttaacacttg-ggatttattt 7708802  T
Q  209 ggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    ||||||| ||| |||| ||||||||||||| ||||  |||| |||||||| ||||||||||||||    
T  7708803 ggcaaacagagaaaaaggtgagggactaaaacgccacttttattaattgtagaaccaaaatgaaa 7708867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 164 - 286
Target Start/End: Original strand, 42810173 - 42810296
Alignment:
Q  164 caccatagacatttgggg-ttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaa 261  Q
    |||||||||||| ||||| ||||| |||||||| | ||||||||||||||||||||||||||||||||||||| ||  |   ||||| |||||||||| |    
T  42810173 caccatagacatctgggggttaaacttaacaccaa-ggatttatttggcaaacggaggaaaatgtgagggacttaaaagtacgttttattaattgtggga 42810271  T
Q  262 ccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||   |||||||||||    
T  42810272 ccaaaatgaaaagttgaaattattt 42810296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 145 - 272
Target Start/End: Complemental strand, 54865268 - 54865142
Alignment:
Q  145 accatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcct 244  Q
    |||||||||||||||||  ||| ||||||||||| | |||||||| |||   ||| ||||||||| |||||||||||||||||||||||||||| | |      
T  54865268 accatctataatgttgactcacaatagacatttgagattaaagttgacataaatg-atttatttgacaaacggaggaaaatgtgagggactaaaacacaa 54865170  T
Q  245 gttttttaattgtggaaccaaaatgaaa 272  Q
     ||| |||||| ||| ||||||||||||    
T  54865169 ttttattaattatgggaccaaaatgaaa 54865142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 309
Target Start/End: Original strand, 49343973 - 49344126
Alignment:
Q  158 ttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtg-agggactaaagcgcctgtttt-ttaatt 255  Q
    ||||||||||||||| | || |||||||| |||||| | |  ||||||||||||||||||||||||| ||| ||||||| || | |  ||||| ||||||    
T  49343973 ttgatccaccatagatacttagggttaaacttaacatcgaatgatttatttggcaaacggaggaaaaagtgaagggacttaaacccacgttttattaatt 49344072  T
Q  256 gtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    |||| |||||||| ||||  | ||||||||| ||| ||||  ||||||||||||    
T  49344073 gtgggaccaaaataaaagcttaaaattatttagaggaccattggatcaaataag 49344126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 100 - 271
Target Start/End: Complemental strand, 50547116 - 50546944
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttg-gggttaaagttaacacccat 198  Q
    |||||||| |||| ||||||| |||||| ||| |||||| |  ||||||  | ||| ||| |||| ||||||||||||| |||||||| ||||||   |     
T  50547116 agatcaaatggttgaaattaa-aaaattaatagagtttatggtggaccacttctaaggtttatccgccatagacatttgagggttaaacttaacaggtag 50547018  T
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaa 271  Q
    ||||||||||||||||||| ||||||  |||||||||||| |||| | ||| |||||||||| || ||||||||    
T  50547017 ggatttatttggcaaacggtggaaaagatgagggactaaaacgccatttttattaattgtgggactaaaatgaa 50546944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 122 - 287
Target Start/End: Original strand, 393566 - 393732
Alignment:
Q  122 aaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggagga 221  Q
    |||||| |||| || ||||| ||||||  | ||| |||| ||||| ||| |||||| |  ||||||||||||  |  ||||||||||||||||||||| |    
T  393566 aaaattaataaggtctacgatggaccacttttaaggttggtccactataaacatttagaattaaagttaacagtccgggatttatttggcaaacggagaa 393665  T
Q  222 aaatgtgagggactaaa-gcgcctgttttttaattgtggaaccaaaatgaaagtctgaaattatttg 287  Q
    ||| ||||||||| ||| |   || ||| |||||||||| |||||||||||| | ||||||||||||    
T  393666 aaaagtgagggaccaaaagatactttttattaattgtgggaccaaaatgaaaatttgaaattatttg 393732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 4871342 - 4871480
Alignment:
Q  172 acatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatga 270  Q
    ||||||||| ||||||||||||  || ||||||||||| ||||||||| |||| ||| |||||| || |    ||||| |||||||| ||||||||||||    
T  4871342 acatttgggattaaagttaacattcagggatttatttgacaaacggagaaaaacgtgggggacttaaacatacgttttattaattgtagaaccaaaatga 4871441  T
Q  271 aagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    ||   ||||||||||| | | ||||| ||||||||||||    
T  4871442 aaacatgaaattattttggggaccaatggatcaaataag 4871480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 5591357 - 5591494
Alignment:
Q  103 tcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgtt--gatccaccatagacatttggggttaaagttaacacccatgg 200  Q
    ||||||||||||||||   |||||| |||| || || |  |||| ||||||||||||  |||| ||||||||||||||  |||||| |||||| |||  |    
T  5591357 tcaaagggttaaaattggaaaaattaataaggtctatggtggactatctataatgttttgatctaccatagacatttgaagttaaatttaacagccaaag 5591456  T
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    ||||||||||||||| ||| |||  |||||||||||||    
T  5591457 atttatttggcaaacagagaaaagagtgagggactaaa 5591494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 13166732 - 13166814
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaag 239  Q
    |||| |||| ||||||||||||  |||||| ||||||  || |||||||||||||||||||| ||||| ||||||||||||||    
T  13166732 gttggtccatcatagacatttgaagttaaacttaacagtcaaggatttatttggcaaacggatgaaaaagtgagggactaaag 13166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 98 - 224
Target Start/End: Complemental strand, 27847888 - 27847764
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    ||||||||||||||||||||| | |||||| |||| || || |  |||| ||||||||| |||  |||||||| ||||||||||||||| ||||| |       
T  27847888 aaagatcaaagggttaaaattga-aaaattaataaggtctatggtggactatctataatcttggcccaccatatacatttggggttaaacttaac-cgtc 27847791  T
Q  198 tggatttatttggcaaacggaggaaaa 224  Q
    ||||||||||||||||||||| |||||    
T  27847790 tggatttatttggcaaacggaagaaaa 27847764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 103 - 238
Target Start/End: Complemental strand, 48127013 - 48126876
Alignment:
Q  103 tcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgtt--gatccaccatagacatttggggttaaagttaacacccatgg 200  Q
    ||||||||||||||||   |||||| |||| || || |  |||| ||||||||||||  |||| ||||||||||||||  |||||| |||||| |||  |    
T  48127013 tcaaagggttaaaattggaaaaattaataaggtctatggtggactatctataatgttttgatctaccatagacatttgaagttaaatttaacagccaaag 48126914  T
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    ||||||||||||||| ||| |||  |||||||||||||    
T  48126913 atttatttggcaaacagagaaaagagtgagggactaaa 48126876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 238
Target Start/End: Original strand, 50548175 - 50548267
Alignment:
Q  144 gaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    ||||||||||||||||| ||||| ||||||||||| | |||||||| ||    | ||||||||||||||||| ||||||||||||||||||||||    
T  50548175 gaccatctataatgttggtccacaatagacatttgag-ttaaagttgacggaaa-ggatttatttggcaaacagaggaaaatgtgagggactaaa 50548267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 287
Target Start/End: Complemental strand, 1189051 - 1188865
Alignment:
Q  102 atcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaa-gttaacacccatgg 200  Q
    |||||| |||| |||||||  |||||  ||| || ||||  |||||| ||| ||||||| | |||||||||||||| |||||||| ||||||   |  ||    
T  1189051 atcaaatggtttaaattaagcaaattattaaggtctacggtggaccacctacaatgttggttcaccatagacatttagggttaaaagttaacgttcg-gg 1188953  T
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttg 287  Q
    |||||||||||||||||||||||| ||||||||| |||  |   ||||| |||||||||| |||||||| |||   ||||||||||||    
T  1188952 atttatttggcaaacggaggaaaaagtgagggaccaaaatgtacgttttattaattgtgggaccaaaataaaaacttgaaattatttg 1188865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 309
Target Start/End: Complemental strand, 2311034 - 2310923
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaac 297  Q
    ||||||||||||||| ||||||||||| |||||||| ||| ||   ||||| |||||||||| ||||||||||||   |||||||| || ||| ||||      
T  2311034 ggatttatttggcaatcggaggaaaatctgagggaccaaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattaattagaggaccatt 2310935  T
Q  298 ggatcaaataag 309  Q
    ||||||||||||    
T  2310934 ggatcaaataag 2310923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 287
Target Start/End: Complemental strand, 6348366 - 6348177
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggacca-tctataatgttgatccaccatagacatttggggttaaagttaacaccc 196  Q
    ||||||||||||||||||||||  || ||| |||| || ||||  |||||| ||| ||| |||| ||||||||||||||||| ||||||| |||||   |    
T  6348366 aaagatcaaagggttaaaattagaaatattaataaggtctacggtggaccactct-taaggttggtccaccatagacatttgaggttaaacttaaccatc 6348268  T
Q  197 atggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttg 287  Q
    | | ||||||||| ||||| |||||||| |||||| || |||  |   ||||| |||||||||| ||||||||||||   ||||||||||||    
T  6348267 a-gaatttatttgacaaacagaggaaaaagtgaggaaccaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttg 6348177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 283
Target Start/End: Original strand, 23203869 - 23204043
Alignment:
Q  109 ggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttattt 208  Q
    ||||||||||||||||||| |||| || ||| |  |||||  | ||| |||||||||||||||| |||| | ||||||||||| | |   ||||||| ||    
T  23203869 ggttaaaattaacaaaattaataaggtctacaatagaccacttttaaggttgatccaccatagatatttagagttaaagttaata-cttgggatttaatt 23203967  T
Q  209 ggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaagtctgaaatta 283  Q
    ||||||||||| ||||  ||| |||| ||| |||| | ||| |||| ||||| |||||||||||| | ||||||||    
T  23203968 ggcaaacggagaaaaagatgacggaccaaaacgccatttttattaaatgtgggaccaaaatgaaaatatgaaatta 23204043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 1587394 - 1587258
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaa-gttaacaccc 196  Q
    |||||||||| |||||| |||||||||||| |||| || ||||| ||| ||  | ||| |||| || || |||||||||| | |||||| ||||||   |    
T  1587394 aaagatcaaacggttaagattaacaaaattaataaggtatacgatggaacacttttaaagttggtctactatagacatttagagttaaaagttaac---c 1587298  T
Q  197 at--ggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    ||  |||||||||||||||||||||||||| |||||||||    
T  1587297 atcgggatttatttggcaaacggaggaaaaagtgagggac 1587258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 7707699 - 7707625
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcg-cctgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||| ||||||||||||| |||||||| || | | ||| |||||||||| ||||||||||||    
T  7707699 ggatttatttggcaaacagaggaaaatgtgatggactaaaacgtcatttttattaattgtgggaccaaaatgaaa 7707625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 31965964 - 31965911
Alignment:
Q  180 ggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||    
T  31965964 ggttaaacttaacaccca-ggatttatttggcaaacggaggaaaaagtgagggac 31965911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 33231599 - 33231426
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttg-gggttaaagttaacacccat 198  Q
    |||||||| |||| ||||||| |||||| ||| |||||| |  ||||||  | ||| |||  ||||||||||||||||| |||||||| ||||||   ||    
T  33231599 agatcaaatggttgaaattaa-aaaattaatagagtttatggtggaccacttctaaggtttgtccaccatagacatttgagggttaaacttaacaagtat 33231501  T
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    | ||||||||||||||||| | ||||  |||||||||||| | || | ||| |||||||||| || |||||||||    
T  33231500 gaatttatttggcaaacggtgaaaaagatgagggactaaaacaccatttttattaattgtgggactaaaatgaaa 33231426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 37884182 - 37884307
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    |||||||||||||||||||||   ||| || |||| || || |  |||| || |||||| ||| | ||||||| | ||||||||||||| ||||||  |     
T  37884182 aaagatcaaagggttaaaattggaaaatttaataaggtctatggtggactatatataatattggttcaccatatatatttggggttaaacttaacagtc- 37884280  T
Q  198 tggatttatttggcaaacggaggaaaa 224  Q
    |||||||||||||||||||||||||||    
T  37884281 tggatttatttggcaaacggaggaaaa 37884307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 102 - 287
Target Start/End: Original strand, 44503587 - 44503772
Alignment:
Q  102 atcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggtt-aaagttaacacccatgg 200  Q
    |||||| |||| |||||||  |||||  ||| || ||||  |||||||||| ||||||| | |||||||||||||| ||||| |||||||||   |  ||    
T  44503587 atcaaatggtttaaattaagcaaattattaaggtctacggtggaccatctacaatgttggttcaccatagacatttagggttaaaagttaacggtc-ggg 44503685  T
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaagcgcctgttttttaattgtggaaccaaaatgaaagtctgaaattatttg 287  Q
    ||||||||||||||| |||||||| ||||||||| |||  |   |||| |||||||||  |||||||| |||   ||||||||||||    
T  44503686 atttatttggcaaacagaggaaaaagtgagggaccaaaatgtacgtttattaattgtgagaccaaaataaaaacttgaaattatttg 44503772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 174 - 283
Target Start/End: Original strand, 54866612 - 54866720
Alignment:
Q  174 atttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||| |||||| ||||||  |||| |||||||||||||||||||||||| || |||||||||| | || | ||| |||||||||| ||||||||||||    
T  54866612 atttggagttaaacttaacagtcatg-atttatttggcaaacggaggaaaacgtaagggactaaaacaccatttttattaattgtgg-accaaaatgaaa 54866709  T
Q  273 gtctgaaatta 283  Q
     | ||||||||    
T  54866710 atatgaaatta 54866720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 11438476 - 11438608
Alignment:
Q  102 atcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatgga 201  Q
    |||||| |||| |||||||  ||||| |||  ||||| |  |||||| ||| | ||||| |||||| |||||||||||||||||| |||| |  ||  ||    
T  11438476 atcaaatggtttaaattaaagaaattaatagggtttatggtggaccacctacactgttggtccaccgtagacatttggggttaaacttaaaagtcagaga 11438575  T
Q  202 tttatttggcaaacggaggaaaatgtgagggac 234  Q
    ||||||| ||||| ||||||||| |||||||||    
T  11438576 tttatttagcaaatggaggaaaaagtgagggac 11438608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 224
Target Start/End: Complemental strand, 13165716 - 13165581
Alignment:
Q  89 ttttaaaacaaagatcaaagggttaaaattaacaaaattgataaagtttacgacggacca-tctataatgttgatccaccatagacatttggggttaaag 187  Q
    |||||||| |||||||||| |||| ||||||| | |||| || |||| || |  |||||| ||| ||| |||| ||||||||||| |||||  ||||||     
T  13165716 ttttaaaaaaaagatcaaacggtttaaattaaaataattaatgaagtctatggtggaccactct-taaggttggtccaccatagaaatttgaagttaaac 13165618  T
Q  188 ttaacacccatggatttatttggcaaacggaggaaaa 224  Q
    ||||||  || ||||||||||| ||||||||||||||    
T  13165617 ttaacagtcaaggatttatttgacaaacggaggaaaa 13165581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 234
Target Start/End: Original strand, 13533166 - 13533300
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    |||||||||| |||||||||| | |||||| |||| || || |  |||| ||||||||||||| |||||||||||||||||  |||||| ||||||  |     
T  13533166 aaagatcaaatggttaaaattga-aaaattaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagttaaatttaacagtc- 13533263  T
Q  198 tggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    |||||||||||| |  ||||||  ||| |||||||||    
T  13533264 tggatttatttgaccgacggagacaaacgtgagggac 13533300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 272
Target Start/End: Complemental strand, 40792946 - 40792788
Alignment:
Q  112 taaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggc 211  Q
    ||||||||| |||||| |||| || ||| |  |||||  | ||| |||| ||||| ||||||||||   |||||||||||| |    |||||||||||||    
T  40792946 taaaattaagaaaattaataaggtctaccatagaccacttttaaggttggtccactatagacatttaaagttaaagttaactcg---ggatttatttggc 40792850  T
Q  212 aaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    |||||||| ||||| |||||||| |||  |  |||||| |||||||||| ||||||||||||    
T  40792849 aaacggagaaaaatctgagggaccaaaatgtatgttttattaattgtgggaccaaaatgaaa 40792788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 2312462 - 2312523
Alignment:
Q  173 catttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggact 235  Q
    |||||||||||||| |||||   |||| |||||||||||||||||||||||| ||||||||||    
T  2312462 catttggggttaaacttaacggtcatg-atttatttggcaaacggaggaaaaagtgagggact 2312523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 10167536 - 10167462
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgc-ctgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||| ||||||||||||||| ||||||||||||  ||  | ||| |||||||||| ||||||||||||    
T  10167536 ggatttatttgacaaacggaggaaaatatgagggactaaaatgcaatttttattaattgtggtaccaaaatgaaa 10167462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 229
Target Start/End: Complemental strand, 14524384 - 14524298
Alignment:
Q  143 ggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtga 229  Q
    |||| ||||||||||||| ||||||||||| |||| || ||||| |||| | ||||  |||| ||| ||||||||||||||| ||||    
T  14524384 ggactatctataatgttggtccaccatagatattttggattaaacttaaaagccataaatttttttagcaaacggaggaaaaagtga 14524298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 53204472 - 53204398
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||||||| ||||  ||||| |||||| |||||||||| |||||||||  | ||||||||||    
T  53204472 ggatttatttggcaaacggagaaaaaattgaggaactaaaacgcctgttttattaattgtgagatcaaaatgaaa 53204398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 309
Target Start/End: Complemental strand, 390361 - 390217
Alignment:
Q  165 accatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaacc 263  Q
    |||| ||||||||| ||||||| ||||||  || |||||||||||||||||||||||| |  |||||||| |||      ||||| |||||||||| |||    
T  390361 accacagacatttgaggttaaacttaacagtca-ggatttatttggcaaacggaggaagaaatgagggaccaaaatatacgttttattaattgtgggacc 390263  T
Q  264 aaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    |||||||||   ||||||||||| | | ||||| | ||||||||||    
T  390262 aaaatgaaaacttgaaattatttaggggaccaatgaatcaaataag 390217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 287
Target Start/End: Complemental strand, 37882981 - 37882856
Alignment:
Q  164 caccatagacatttggggttaaagttaacacccatg-gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaa 261  Q
    ||||||||| ||||| | ||||||||||||  ||   ||||||||||||||||||||||||| ||||||||| |||  |   ||||| |||||||||| |    
T  37882981 caccatagatatttgagattaaagttaacagtcaaatgatttatttggcaaacggaggaaaaggtgagggaccaaaaggtacgttttattaattgtggga 37882882  T
Q  262 ccaaaatgaaagtctgaaattatttg 287  Q
    | |||||||||   ||||||||||||    
T  37882881 ctaaaatgaaaacttgaaattatttg 37882856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 49342831 - 49342694
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    |||||||||| ||| |||||| | |||||| || |||||||    ||||||  | ||| |||| ||||| |||||| |||||||||||| |||||||| |    
T  49342831 aaagatcaaacggtcaaaatttaaaaaattaatgaagtttatagtggaccacttttaaggttggtccactatagacgtttggggttaaacttaacaccga 49342732  T
Q  198 tggatttatttggcaaacggaggaaaatgtgagggact 235  Q
       ||||||||  |||| ||||||||| ||||||||||    
T  49342731 ataatttatttaacaaatggaggaaaaagtgagggact 49342694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 21861081 - 21861157
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacattgaatatttagtgaacctaaa 388  Q
    ||||||| || |||||||||| ||||||||||||| | |||||| ||| |||||||| | |||||| |||| |||||    
T  21861081 ttttttagatacattgaataattaatgtatctgacttttatatagaccagatacattaattatttaatgaatctaaa 21861157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 21916944 - 21917020
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacattgaatatttagtgaacctaaa 388  Q
    ||||||| || |||||||||| ||||||||||||| | |||||| ||| |||||||| | |||||| |||| |||||    
T  21916944 ttttttagatacattgaataattaatgtatctgacttttatatagaccagatacattaattatttaatgaatctaaa 21917020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 10304766 - 10304695
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacattgaatatttagtgaac 383  Q
    ||||||||||||||| |||||||||||||| ||||  ||||||| ||||| | |||||  |||||| |||||    
T  10304766 ttttttaaattcattaaataactaatgtatatgaccgatatatagaccggcttcattggttatttaatgaac 10304695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 22069383 - 22069336
Alignment:
Q  162 tccaccatagacatttggggttaaagttaacacccatggatttatttg 209  Q
    |||||||||||||||||  ||||||||||||| |||| ||||||||||    
T  22069383 tccaccatagacatttgaagttaaagttaacaaccattgatttatttg 22069336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 23201957 - 23201922
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    |||||||||||||||||||||||||| |||||||||    
T  23201957 ggatttatttggcaaacggaggaaaaggtgagggac 23201922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 193
Target Start/End: Complemental strand, 56085495 - 56085464
Alignment:
Q  162 tccaccatagacatttggggttaaagttaaca 193  Q
    ||||||||||||||||||||||||||||||||    
T  56085495 tccaccatagacatttggggttaaagttaaca 56085464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 238
Target Start/End: Original strand, 14524805 - 14524894
Alignment:
Q  148 atctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    ||||||||| ||| |||| |||||||||||||||||||| ||||||   | |||||| ||| ||||||||||| ||| || || |||||||    
T  14524805 atctataatattggtccatcatagacatttggggttaaacttaacagttagggattt-ttttgcaaacggagggaaaagtaagagactaaa 14524894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 34438612 - 34438527
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaa 186  Q
    |||||||| |||| ||||||| |||||| |||| || || |  |||| ||||||||||||  ||||||||||||||||| |||||||    
T  34438612 agatcaaatggttgaaattaa-aaaattaataaggtctatggtggactatctataatgttagtccaccatagacatttgaggttaaa 34438527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 26863130 - 26863171
Alignment:
Q  314 ttttaaattcattgaataactaatgtatctgacatatatata 355  Q
    ||||||||||||||||||| | |||||||||| |||||||||    
T  26863130 ttttaaattcattgaataattgatgtatctgatatatatata 26863171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 357
Target Start/End: Original strand, 48601138 - 48601183
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatctgacatatatataaa 357  Q
    ||||||| ||| ||||||||||||||||||||||| ||||| ||||    
T  48601138 ttttttatatttattgaataactaatgtatctgacctatatgtaaa 48601183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 1588069 - 1588128
Alignment:
Q  173 catttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgaggga 233  Q
    |||||||||||||| ||||||  |||  |||||||||| ||||||||||||| ||||||||    
T  1588069 catttggggttaaacttaacagtcata-atttatttggtaaacggaggaaaaagtgaggga 1588128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 56000492 - 56000408
Alignment:
Q  102 atcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaa 186  Q
    |||||| |||||||||||| ||| ||  ||| || ||||  |||||| ||||||||||| |||||| ||||||||| | ||||||    
T  56000492 atcaaatggttaaaattaaaaaacttagtaaggtctacggtggaccacctataatgttggtccaccttagacatttagtgttaaa 56000408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 212523 - 212828
Alignment:
Q  9 agatgaagaaagcaaaa-ataaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtttatattttaaaaca----aagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |    |||||    
T  212523 agatgaagaaagcaaaaaataaattagttgtaggtggtccactgtaagttaaaatagacctgcgtgatccaatggtttatattttaaaaaaaaagaagat 212622  T
Q  104 caaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatt 203  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  212623 caaaggattaaaattaacaaaattgataaagtctacggcggaccatctataatgttgatcc-ccatagacatttggggttaaagttaacacccatagatt 212721  T
Q  204 tatttggcaaacggaggaaaatgtgagggactaaagcgcctg-ttttttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatc 302  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||||||| || ||||||||| ||||||||||||||| | || || |||||    
T  212722 tatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaattatttgggggactaatggatc 212821  T
Q  303 aaataag 309  Q
    |||||||    
T  212822 aaataag 212828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 239731 - 239426
Alignment:
Q  9 agatgaagaaagcaaaaa-taaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtttatatttt----aaaacaaagat 103  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    |||| ||||||    
T  239731 agatgaagaaagcaaaaaataaattagttgtaggtggtccactgtaagttaaaatagacctgcgtgatccaatggtttatattttaaaaaaaaaaaagat 239632  T
Q  104 caaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatt 203  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  239631 caaaggattaaaattaacaaaattgataaagtctacggcggaccatctataatgttgatcc-ccatagacatttggggttaaagttaacacccatagatt 239533  T
Q  204 tatttggcaaacggaggaaaatgtgagggactaaagcgcctg-ttttttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatc 302  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||||||| || ||||||||| ||||||||||||||| | || || |||||    
T  239532 tatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaattatttgggggactaatggatc 239433  T
Q  303 aaataag 309  Q
    |||||||    
T  239432 aaataag 239426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 726146 - 726451
Alignment:
Q  9 agatgaagaaagcaaaa-ataaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtttatattttaaaaca----aagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |    |||||    
T  726146 agatgaagaaagcaaaaaataaattagttgtaggtggtccactgtaagttaaaatagacctgcgtgatccaatggtttatattttaaaaaaaaagaagat 726245  T
Q  104 caaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatt 203  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  726246 caaaggattaaaattaacaaaattgataaagtctacggcggaccatctataatgttgatcc-ccatagacatttggggttaaagttaacacccatagatt 726344  T
Q  204 tatttggcaaacggaggaaaatgtgagggactaaagcgcctg-ttttttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatc 302  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||||||| || ||||||||| ||||||||||||||| | || || |||||    
T  726345 tatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaattatttgggggactaatggatc 726444  T
Q  303 aaataag 309  Q
    |||||||    
T  726445 aaataag 726451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 309
Target Start/End: Complemental strand, 793086 - 792781
Alignment:
Q  9 agatgaagaaagcaaaaa-taaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtttatatttt----aaaacaaagat 103  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    |||| ||||||    
T  793086 agatgaagaaagcaaaaaataaattagttgtaggtggtccactgtaagttaaaatagacctgcgtgatccaatggtttatattttaaaaaaaaaaaagat 792987  T
Q  104 caaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatt 203  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  792986 caaaggattaaaattaacaaaattgataaagtctacggcggaccatctataatgttgatcc-ccatagacatttggggttaaagttaacacccatagatt 792888  T
Q  204 tatttggcaaacggaggaaaatgtgagggactaaagcgcctg-ttttttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatc 302  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||||||| || ||||||||| ||||||||||||||| | || || |||||    
T  792887 tatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaattatttgggggactaatggatc 792788  T
Q  303 aaataag 309  Q
    |||||||    
T  792787 aaataag 792781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 798647 - 798952
Alignment:
Q  9 agatgaagaaagcaaaa-ataaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtttatattttaaaaca----aagat 103  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |    |||||    
T  798647 agatgaagaaagcaaaaaataaattagttgtaggtggtccactgtaagttaaaatagacctgcgtgatccaatggtttatattttaaaaaaaaagaagat 798746  T
Q  104 caaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatt 203  Q
    |||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  798747 caaaggattaaaattaacaaaattgataaagtctacggcggaccatctataatgttgatcc-ccatagacatttggggttaaagttaacacccatagatt 798845  T
Q  204 tatttggcaaacggaggaaaatgtgagggactaaagcgcctg-ttttttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatc 302  Q
    |||||| |||||| ||||||| ||||||||||||| | |||| |||||||||||||| || ||||||||| ||||||||||||||| | || || |||||    
T  798846 tatttgacaaacgaaggaaaaagtgagggactaaaacacctgtttttttaattgtgggacgaaaatgaaaatctgaaattatttgggggactaatggatc 798945  T
Q  303 aaataag 309  Q
    |||||||    
T  798946 aaataag 798952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 145 - 272
Target Start/End: Complemental strand, 17338205 - 17338078
Alignment:
Q  145 accatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc- 243  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||| |||   | | ||||||||||||||||||| |||||||||||||||||| ||||     
T  17338205 accatctataatgttgacccacaatagacatttgaggttaaagttgacagaaacg-atttatttggcaaacggagaaaaatgtgagggactaaaacgcca 17338107  T
Q  244 tgttttttaattgtggaaccaaaatgaaa 272  Q
    | ||| |||||||||| ||||||||||||    
T  17338106 tttttattaattgtgggaccaaaatgaaa 17338078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 168 - 272
Target Start/End: Complemental strand, 13116471 - 13116367
Alignment:
Q  168 atagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaa 266  Q
    |||||||||||| |||||||||||||  |  ||||||||||||||||||||||||||||||| |||||||| ||||  |||| |||||||||| ||||||    
T  13116471 atagacatttggagttaaagttaacagtcg-ggatttatttggcaaacggaggaaaatgtgaaggactaaaacgccacttttattaattgtgggaccaaa 13116373  T
Q  267 atgaaa 272  Q
    ||||||    
T  13116372 atgaaa 13116367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 42100013 - 42100185
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| |||| || ||||| ||||||  | ||| |||| ||||||| |||||||||  |||||||||||||  |  |    
T  42100013 agatcgaatggttaaaattaacaaaattaataaggtctacgatggaccacttttaaggttggtccaccaaagacatttgaagttaaagttaacagtc-gg 42100111  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    || ||||||||||||||||||||||| |||||||  ||| |||| | ||| |||||||||  ||||||||||||    
T  42100112 gaattatttggcaaacggaggaaaatatgagggatcaaaacgccatttttattaattgtgagaccaaaatgaaa 42100185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 30786888 - 30786753
Alignment:
Q  99 aagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggtt--aaagttaacaccc 196  Q
    ||||||||| ||||||||||||||||||| |||| ||||| || ||||||  | ||| ||||||||||||||||||||| | |||  ||||||||||  |    
T  30786888 aagatcaaacggttaaaattaacaaaattaataaggtttatgatggaccacttttaaagttgatccaccatagacatttagagttaaaaagttaacagtc 30786789  T
Q  197 atggatttatttggcaaacggaggaaaatgtgaggga 233  Q
      | ||||||||||||||||||| |||| ||||||||    
T  30786788 -ggaatttatttggcaaacggagaaaaaagtgaggga 30786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 100 - 286
Target Start/End: Complemental strand, 32797350 - 32797161
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| |||| || ||||| | ||||| | ||| ||||||||| ||||||||||||| |||||| |||||  ||  |    
T  32797350 agatcgaatggttaaaattaacaaaattaataaggtctacgatgaaccatttttaaggttgatccatcatagacatttggagttaaacttaacggccgcg 32797251  T
Q  200 gat--ttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
      |  |||||||| |||||||||||||  ||||||||| || ||   ||||| |||||||||| ||||||||||||   |||||||||||    
T  32797250 atttattatttggtaaacggaggaaaacctgagggacttaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattattt 32797161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 28418916 - 28418829
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    ||||||||||||||||||||||||| ||||||||||||| ||  |||||| |||||| ||| ||||||||||||   |||||||||||    
T  28418916 gatttatttggcaaacggaggaaaaagtgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattattt 28418829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 13117638 - 13117712
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||| |||||||||||||||||||||| |||| | ||| |||||| ||| ||||||||||||    
T  13117638 ggatttatttggcaaacagaggaaaatgtgagggactaaaacgccatttttattaattatgggaccaaaatgaaa 13117712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 283
Target Start/End: Original strand, 17339530 - 17339639
Alignment:
Q  174 atttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||| |||||| ||||||  || |||||||||||||||||||||||||| |||||||||||||  ||| | ||| |||||||| | ||||||||||||    
T  17339530 atttggagttaaacttaacagtca-ggatttatttggcaaacggaggaaaacgtgagggactaaaatgccatttttattaattgttggaccaaaatgaaa 17339628  T
Q  273 gtctgaaatta 283  Q
     | ||||||||    
T  17339629 atatgaaatta 17339639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 32693941 - 32693867
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||  |||||| |||||||||| ||||||||||||    
T  32693941 ggatttatttggcaaacggaggaaaatctgaaggaccaaagcgtatgttttattaattgtgggaccaaaatgaaa 32693867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 6397927 - 6397806
Alignment:
Q  165 accatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaacc 263  Q
    |||||||  |||||| |||||| ||||||  |||| ||||||||||||||||||| ||||  ||||||||||||  |   ||||| |||||||||| |||    
T  6397927 accatagttatttggagttaaatttaacattcatg-atttatttggcaaacggagaaaaaaatgagggactaaaatgtaagttttattaattgtgggacc 6397829  T
Q  264 aaaatgaaagtctgaaattattt 286  Q
    ||||||||| | |||||||||||    
T  6397828 aaaatgaaaatatgaaattattt 6397806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 312 - 393
Target Start/End: Original strand, 42662712 - 42662794
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatctga-catatatataaaccggatacattgaatatttagtgaacctaaacaaat 393  Q
    ||||||||||| ||||||||| |||||||||||| || || |||| ||| |||||||||| |||||| |||||||||| ||||    
T  42662712 ttttttaaatttattgaataattaatgtatctgatcaaatttatagacctgatacattgattatttaatgaacctaaaaaaat 42662794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 234
Target Start/End: Original strand, 30787509 - 30787640
Alignment:
Q  102 atcaaagggttaaaattaacaaaattgataaagtt-tacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatgg 200  Q
    |||||| |||||| ||||||||||||  ||| ||| ||||| | ||||| | ||| |||| ||||| ||| |||||| | |||||||||||||  || ||    
T  30787509 atcaaatggttaagattaacaaaattc-taaggttctacgatgaaccatttttaaagttggtccactataaacatttagagttaaagttaacataca-gg 30787606  T
Q  201 atttatttggcaaacggaggaaaatgtgagggac 234  Q
    |||||||||||||||||| ||||| |||||||||    
T  30787607 atttatttggcaaacggaagaaaaagtgagggac 30787640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 42872161 - 42872233
Alignment:
Q  165 accatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    |||||||||||||| |||||||||||||   || ||||||||||| |||||||||||||| |||| ||||||||    
T  42872161 accatagacatttgaggttaaagttaaccgtca-ggatttatttgacaaacggaggaaaaagtgaaggactaaa 42872233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 211706 - 211618
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||| |||||||| ||||  | |||||||||| || ||||||| |||||||||| ||||||||||||   |||||||||||    
T  211706 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattattt 211618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 240550 - 240638
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||| |||||||| ||||  | |||||||||| || ||||||| |||||||||| ||||||||||||   |||||||||||    
T  240550 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattattt 240638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 725329 - 725241
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||| |||||||| ||||  | |||||||||| || ||||||| |||||||||| ||||||||||||   |||||||||||    
T  725329 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattattt 725241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Original strand, 793905 - 793993
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||| |||||||| ||||  | |||||||||| || ||||||| |||||||||| ||||||||||||   |||||||||||    
T  793905 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattattt 793993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 6398478 - 6398576
Alignment:
Q  174 atttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    |||| |||||||| ||||||  |||| ||||||||| ||||||||||||||  |||||||||||| ||| |||||| |||||| ||  ||||||||||||    
T  6398478 atttagggttaaacttaacagtcatg-atttatttgacaaacggaggaaaaaatgagggactaaaacgcttgttttattaattatgagaccaaaatgaaa 6398576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 151 - 238
Target Start/End: Original strand, 26697790 - 26697876
Alignment:
Q  151 tataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    |||||||||| ||||||||| ||||||||||||||| ||||||   | ||||||||| | |||| ||| ||||| |||||||||||||    
T  26697790 tataatgttggtccaccataaacatttggggttaaacttaacaatta-ggatttattcgacaaaaggaagaaaaagtgagggactaaa 26697876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 28420180 - 28420267
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||| ||||||||||||||  |||||||||||| ||  |||||| |||||| ||| ||||||||||||   |||||||||||    
T  28420180 gatttatttgacaaacggaggaaaaaatgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattattt 28420267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 8571565 - 8571647
Alignment:
Q  143 ggaccatctataatgttgatccaccatagacatttggggttaaagttaaca-cccatggatttatttggcaaacggaggaaaa 224  Q
    ||||||| | ||| |||| ||||||||||||||||||||||||| ||||||  | | |||||||||||| |||||||| ||||    
T  8571565 ggaccatttttaaagttggtccaccatagacatttggggttaaacttaacagactagggatttatttggtaaacggagaaaaa 8571647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 26696643 - 26696569
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||| ||||||||| ||||||||| |||  |  |||||| |||||||||| ||||||||||||    
T  26696643 ggatttatttggcaaatggaggaaaaagtgagggaccaaaatgtatgttttattaattgtgggaccaaaatgaaa 26696569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 22551154 - 22551083
Alignment:
Q  162 tccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    ||||||||||| ||||||||||||| ||||||  |  |||||||||||||||| ||| ||||| |||||||||    
T  22551154 tccaccatagagatttggggttaaacttaacaatccaggatttatttggcaaatgga-gaaaaagtgagggac 22551083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Complemental strand, 24305199 - 24305159
Alignment:
Q  153 taatgttgatccaccatagacatttggggttaaagttaaca 193  Q
    |||||||| |||||||||||||||| |||||||||||||||    
T  24305199 taatgttggtccaccatagacatttagggttaaagttaaca 24305159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 309
Target Start/End: Complemental strand, 42870947 - 42870813
Alignment:
Q  175 tttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaag 273  Q
    |||||||||||| ||||||  || ||||| ||| ||||||| || ||||| || |||||||||| ||   ||||| |||||||||| ||||||||||||     
T  42870947 tttggggttaaacttaacagtca-ggattcattcggcaaacagacgaaaaagtaagggactaaaacgtacgttttattaattgtgggaccaaaatgaaaa 42870849  T
Q  274 tctgaaattatttggagaaccaacggatcaaataag 309  Q
      ||||||||||| |  |||||  ||||||||||||    
T  42870848 cttgaaattatttaggaaaccattggatcaaataag 42870813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 341
Target Start/End: Complemental strand, 30114852 - 30114823
Alignment:
Q  312 ttttttaaattcattgaataactaatgtat 341  Q
    ||||||||||||||||||||||||||||||    
T  30114852 ttttttaaattcattgaataactaatgtat 30114823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 42098698 - 42098600
Alignment:
Q  173 catttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaa 271  Q
    |||||||||||||| ||||||  |  |||||||||||||||||||||  ||| ||| ||||  ||| ||||  |||| |||||||||| |||||||||||    
T  42098698 catttggggttaaaattaacagtc--ggatttatttggcaaacggagacaaacgtgggggatcaaaacgccacttttattaattgtgggaccaaaatgaa 42098601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 12328811 - 12328779
Alignment:
Q  313 tttttaaattcattgaataactaatgtatctga 345  Q
    ||||||||| |||||||||||||||||||||||    
T  12328811 tttttaaatccattgaataactaatgtatctga 12328779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 193
Target Start/End: Original strand, 24192626 - 24192662
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaaca 193  Q
    |||| |||||||||||||||| |||||||||||||||    
T  24192626 gttggtccaccatagacatttagggttaaagttaaca 24192662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 30464429 - 30464397
Alignment:
Q  313 tttttaaattcattgaataactaatgtatctga 345  Q
    ||||||||||||||||||| |||||||||||||    
T  30464429 tttttaaattcattgaatatctaatgtatctga 30464397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 192
Target Start/End: Original strand, 31845764 - 31845792
Alignment:
Q  164 caccatagacatttggggttaaagttaac 192  Q
    |||||||||||||||||||||||||||||    
T  31845764 caccatagacatttggggttaaagttaac 31845792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 22308767 - 22308892
Alignment:
Q  162 tccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtgga 260  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||| |||     
T  22308767 tccaccatagacatttggggttaaacttaacaaccatggatttatttggcaaacggagcaaaatgtgagggactaaaacgcctgttttattaattatggg 22308866  T
Q  261 accaaaatgaaagtctgaaattattt 286  Q
    ||||||||||||   |||||||||||    
T  22308867 accaaaatgaaaacatgaaattattt 22308892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 98 - 287
Target Start/End: Original strand, 325090 - 325279
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatcta-taatgttgatccaccatagacatttggggttaaagttaacaccc 196  Q
    |||||||||| ||||||||||||||||||| |||| || ||||| |||||| ||| ||| |||| |||||||||||||||| | |||||||||||||  |    
T  325090 aaagatcaaacggttaaaattaacaaaattaataaggtctacgatggacca-ctattaaggttggtccaccatagacatttagagttaaagttaacagtc 325188  T
Q  197 atggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttg 287  Q
      ||||||||||||||||||||||||||  |||||||| |||  |   ||||| |||||||||| ||||||||||||   ||||||||||||    
T  325189 -gggatttatttggcaaacggaggaaaacttgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttg 325279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 32758038 - 32757926
Alignment:
Q  98 aaagatcaaagggttaaaatt-aacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccc 196  Q
    ||||||||||||||||||||| || |||||| |||| || || |  |||| |||||  |||||| |||||||||||||||||||||||||||||||||||    
T  32758038 aaagatcaaagggttaaaattgaaaaaaattaataaggtctatggtggactatctaccatgttggtccaccatagacatttggggttaaagttaacaccc 32757939  T
Q  197 atggatttatttg 209  Q
    |||||||||||||    
T  32757938 atggatttatttg 32757926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 157 - 272
Target Start/End: Original strand, 33173923 - 33174039
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaatt 255  Q
    |||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| |||||||| ||||||||||||| |||| | ||| |||| |    
T  33173923 gttggtccaccatagacatttggggttaaacttaacagccaaggatttatttggcaaacagaggaaaaggtgagggactaaaacgccatttttattaaat 33174022  T
Q  256 gtggaaccaaaatgaaa 272  Q
    |||| | ||||||||||    
T  33174023 gtgggatcaaaatgaaa 33174039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 272
Target Start/End: Original strand, 30912084 - 30912241
Alignment:
Q  115 aattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaa 214  Q
    ||||||||||||| |||| || || || | ||||  | ||| |||| ||||||||||| |||||| ||||||||||||||    ||||||||||||||||    
T  30912084 aattaacaaaattaataaggtctatgatgtaccacttttaaggttggtccaccatagatatttggagttaaagttaacacttg-ggatttatttggcaaa 30912182  T
Q  215 cggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    ||||| |||| ||||||||||||| ||||  |||| |||||||||| ||||||||||||    
T  30912183 cggagaaaaaggtgagggactaaaacgccacttttattaattgtgggaccaaaatgaaa 30912241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 153 - 238
Target Start/End: Complemental strand, 33172709 - 33172625
Alignment:
Q  153 taatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    |||||||| ||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||| ||||||||    
T  33172709 taatgttg-tccactatagaaatttggggttaaacttaacaccgatggatttatttggcaaacggagaaaaatgtgaaggactaaa 33172625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 173 - 309
Target Start/End: Complemental strand, 39603989 - 39603853
Alignment:
Q  173 catttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaa 271  Q
    |||||||||||||| ||||||  |||| ||||||||||||||||||||||||| |||||||| ||| ||   ||||| |||||||||| | |||||||||    
T  39603989 catttggggttaaacttaacagtcatg-atttatttggcaaacggaggaaaatttgagggaccaaaacgtacgttttattaattgtgggatcaaaatgaa 39603891  T
Q  272 agtctgaaattatttggagaaccaacggatcaaataag 309  Q
    |   ||||||||||||  | | ||| ||||||||||||    
T  39603890 aacttgaaattatttgagggatcaatggatcaaataag 39603853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 22307619 - 22307545
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||| ||| |||| ||||||||||||| | |||||||| |||||| ||||||||||||||||    
T  22307619 ggatttatttggcaaacagagcaaaaagtgagggactaaaacacctgttttattaattatggaaccaaaatgaaa 22307545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 39605474 - 39605548
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||||||||||||| |||||||| ||| ||  |||||| |||||||||| ||||||||||||    
T  39605474 ggatttatttggcaaacggaggaaaatctgagggaccaaaacgtatgttttattaattgtgggaccaaaatgaaa 39605548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 272
Target Start/End: Complemental strand, 22047887 - 22047769
Alignment:
Q  157 gttgatccaccatagacat---ttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-tta 252  Q
    |||||||||||||||||||   || | |||||| |||||| ||| ||||||||||||||||||||||||||  |||||||| ||| ||   ||||| |||    
T  22047887 gttgatccaccatagacatcatttagagttaaacttaacagcca-ggatttatttggcaaacggaggaaaaaatgagggaccaaaacgtacgttttatta 22047789  T
Q  253 attgtggaaccaaaatgaaa 272  Q
    ||||||| ||||||||||||    
T  22047788 attgtgggaccaaaatgaaa 22047769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 30910851 - 30910778
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||| |||| |||||||||||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  30910851 gatttatttggtaaacagaggaaaatgtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaa 30910778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 22049111 - 22049229
Alignment:
Q  168 atagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaa 266  Q
    ||||||||||||||||||| |||||| | | ||||||||||| ||||| |||||||| ||||||||| ||| ||   ||||| |||||| ||| ||||||    
T  22049111 atagacatttggggttaaacttaacagc-agggatttatttgccaaacagaggaaaaagtgagggaccaaaacgtacgttttattaattatgggaccaaa 22049209  T
Q  267 atgaaagtctgaaattattt 286  Q
    ||||||   |||||||||||    
T  22049210 atgaaaacttgaaattattt 22049229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 9169753 - 9169704
Alignment:
Q  143 ggaccatctataatgttgatccaccatagacatttggggttaaagttaac 192  Q
    |||||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  9169753 ggaccatctataatattggtccactatagacatttggggttaaagttaac 9169704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 287
Target Start/End: Original strand, 30859181 - 30859266
Alignment:
Q  203 ttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttg 287  Q
    ||||||||||||| ||||||||||||||||||| || ||   ||||| |||||||||| ||||||||||||   ||||||||||||    
T  30859181 ttatttggcaaacagaggaaaatgtgagggacttaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttg 30859266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 27705323 - 27705436
Alignment:
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacgg 299  Q
    |||||||||||||| |||||||||| |||||||| ||| ||   ||||| ||||||||   ||||||||||||   ||||||||||||  ||||||  |     
T  27705323 atttatttggcaaaaggaggaaaatctgagggaccaaaacgtacgttttattaattgtatgaccaaaatgaaaacttgaaattatttgaggaaccattga 27705422  T
Q  300 atcaaataagtctt 313  Q
    ||||||||||||||    
T  27705423 atcaaataagtctt 27705436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 9220419 - 9220459
Alignment:
Q  153 taatgttgatccaccatagacatttggggttaaagttaaca 193  Q
    |||||||| ||||||||||||||||| ||||||||||||||    
T  9220419 taatgttggtccaccatagacatttgaggttaaagttaaca 9220459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 342
Target Start/End: Original strand, 38826061 - 38826091
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatc 342  Q
    |||||||||||||||||||||||||||||||    
T  38826061 ttttttaaattcattgaataactaatgtatc 38826091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 346
Target Start/End: Complemental strand, 14958952 - 14958919
Alignment:
Q  313 tttttaaattcattgaataactaatgtatctgac 346  Q
    ||||||||||||||||||||||||||||| ||||    
T  14958952 tttttaaattcattgaataactaatgtatatgac 14958919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 15548373 - 15548310
Alignment:
Q  173 catttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    ||||| |||||||| ||||||  || ||||||||||||||||||||||||||  ||||||||||||    
T  15548373 catttagggttaaacttaacaggca-ggatttatttggcaaacggaggaaaa-atgagggactaaa 15548310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 1102763 - 1102735
Alignment:
Q  165 accatagacatttggggttaaagttaaca 193  Q
    |||||||||||||||||||||||||||||    
T  1102763 accatagacatttggggttaaagttaaca 1102735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 345
Target Start/End: Complemental strand, 7065694 - 7065662
Alignment:
Q  313 tttttaaattcattgaataactaatgtatctga 345  Q
    |||||||||||||||||||| ||||||||||||    
T  7065694 tttttaaattcattgaataattaatgtatctga 7065662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 16829311 - 16829255
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacatt 368  Q
    |||||||  ||||| |||||||||||||||||||| | |||||||||  ||||||||    
T  16829311 ttttttaggttcatcgaataactaatgtatctgacctttatataaactagatacatt 16829255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 100 - 296
Target Start/End: Original strand, 63037 - 63234
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    |||||||| |||||||||| | |||||| || ||||||| |  |||||||   |||  |||||||| ||||||||||||  |||||| ||||||  || |    
T  63037 agatcaaacggttaaaatttaaaaaattaatgaagtttatggtggaccattcttaagattgatccatcatagacatttgaagttaaacttaacagtcagg 63136  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaa 296  Q
    |||||||||||||||||||| |||||||||||||||||| |||| | ||| |||||||||| ||||||||||||    |||||||||||||| |||||    
T  63137 gatttatttggcaaacggagaaaaatgtgagggactaaaacgccatctttattaattgtgggaccaaaatgaaaacacgaaattatttggaggaccaa 63234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 61961 - 61874
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    ||||||||||||||||||| |||||  |||||||||||| |||| | ||| |||||| ||  ||||||||||||   |||||||||||    
T  61961 gatttatttggcaaacggaagaaaagatgagggactaaaacgccatttttattaattatgagaccaaaatgaaaacatgaaattattt 61874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 91 - 209
Target Start/End: Original strand, 2277366 - 2277484
Alignment:
Q  91 ttaaaacaaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagtta 190  Q
    |||||| ||||||||||||||||||||| | |||||| |||| || || |  |||| |||||  |||||| |||||||||||||||||||||||||||||    
T  2277366 ttaaaaaaaagatcaaagggttaaaattgaaaaaattaataaggtctatggtggactatctaccatgttggtccaccatagacatttggggttaaagtta 2277465  T
Q  191 acacccatggatttatttg 209  Q
    || ||||||||||||||||    
T  2277466 actcccatggatttatttg 2277484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 100 - 309
Target Start/End: Original strand, 32470482 - 32470691
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| |||| || ||||| ||||||| | ||| ||| ||||||||||||||||||| |||||| |||||| ||  |    
T  32470482 agatcgaatggttaaaattaacaaaattaataaggtctacgatggaccatttttaaggtttatccaccatagacatttggagttaaacttaacagcc-gg 32470580  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacg 298  Q
    |||||||||| ||||||||||||||  ||||| ||| || ||   ||||| |||||||||| |||||||| |||   ||||||||||| | | || || |    
T  32470581 gatttatttgacaaacggaggaaaacatgaggaacttaaacgtacgttttattaattgtgggaccaaaataaaaacttgaaattatttaggggactaatg 32470680  T
Q  299 gatcaaataag 309  Q
    |||||||||||    
T  32470681 gatcaaataag 32470691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 34147349 - 34147237
Alignment:
Q  98 aaagatcaaagggttaaaatt-aacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccc 196  Q
    ||||||||||||||||||||| || |||||| |||| || || |  |||| |||||  |||||| |||||||||||||||||||||||||||||||||||    
T  34147349 aaagatcaaagggttaaaattgaaaaaaattaataaggtctatggtggactatctaccatgttggtccaccatagacatttggggttaaagttaacaccc 34147250  T
Q  197 atggatttatttg 209  Q
    |||||||||||||    
T  34147249 atggatttatttg 34147237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 98 - 287
Target Start/End: Original strand, 28562714 - 28562903
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    |||||||||||||||||||||   ||| || |||| || || |  |||| ||||||||||||| ||||||||| | ||||||| ||||| ||||||  |     
T  28562714 aaagatcaaagggttaaaattggaaaatttaataaggtctatggtggactatctataatgttggtccaccatatatatttgggattaaacttaacagtc- 28562812  T
Q  198 tggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttg 287  Q
    |||||||||||| |||||||||||||| ||||||||| |||  |  |||||| |||||| ||| |||||||||||| | ||||||||||||    
T  28562813 tggatttatttgacaaacggaggaaaaagtgagggaccaaaaggtatgttttattaattatgggaccaaaatgaaaatttgaaattatttg 28562903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 122 - 286
Target Start/End: Complemental strand, 11316120 - 11315956
Alignment:
Q  122 aaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggagga 221  Q
    |||||| |||| || ||||  ||||||| | ||| |||||||||||||||||||||||  ||||| |||||| ||  |||||||||||||||||||||||    
T  11316120 aaaattaataaggtctacggtggaccatttttaaggttgatccaccatagacatttggaattaaacttaacagccg-ggatttatttggcaaacggagga 11316022  T
Q  222 aaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||  ||||||||| || ||   ||||| |||||||||| ||||||||||||   |||||||||||    
T  11316021 aaacctgagggacttaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattattt 11315956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 6032218 - 6032389
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    |||||||||| || |||||||||  ||||| |||| || ||||| ||| ||| | | |||||| || ||||||||||||||  ||||||||||||   ||    
T  6032218 aaagatcaaacggctaaaattaattaaattaataaggtctacgatggatcatgtcttatgttggtcaaccatagacatttgaagttaaagttaacggtca 6032317  T
Q  198 tggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaat 268  Q
    |||||||||||||||||| ||||||||  |  ||||||||| | || | ||| |||||||||||||||||||    
T  6032318 tggatttatttggcaaacagaggaaaaaatacgggactaaaacaccatttttattaattgtggaaccaaaat 6032389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 18617011 - 18617085
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  18617011 ggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaa 18617085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 29219496 - 29219422
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  29219496 ggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaa 29219422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 29332795 - 29332721
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||||||||||||| ||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  29332795 ggatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaa 29332721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 43033226 - 43033105
Alignment:
Q  165 accatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaacc 263  Q
    |||||||||||||| ||||||| |||||| | | |||||||||||||||||||||||||| ||||||||| |||  |   ||||| |||||||||| |||    
T  43033226 accatagacatttgaggttaaacttaacatcga-ggatttatttggcaaacggaggaaaaagtgagggaccaaaaggtacgttttattaattgtgggacc 43033128  T
Q  264 aaaatgaaagtctgaaattattt 286  Q
    |||||||||   |||||||||||    
T  43033127 aaaatgaaaacttgaaattattt 43033105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 100 - 283
Target Start/End: Complemental strand, 1083197 - 1083014
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| |||| || ||| |  |||||  | ||| |||||||||||||||| |||| | ||||||||||||||    |    
T  1083197 agatcgaatggttaaaattaacaaaattaataaggtctacaatagaccacttttaaggttgatccaccatagatatttagagttaaagttaacacttg-g 1083099  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaatta 283  Q
    |||||| ||||||||||||| ||||  ||| |||| ||| | ||  |||| |||| ||||| |||||||||||| | ||||||||    
T  1083098 gatttaattggcaaacggagaaaaagatgacggaccaaaacaccatttttattaaatgtgggaccaaaatgaaaatatgaaatta 1083014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 7436686 - 7436591
Alignment:
Q  89 ttttaaaacaaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggtta 184  Q
    |||||||| |||||||||||| ||||||||    ||||| ||||||| ||||| |||| ||||| ||||||| | ||||||| |||||||||||||    
T  7436686 ttttaaaaaaaagatcaaaggattaaaattggacaaattaataaagtctacgatggactatctacaatgttggttcaccatatacatttggggtta 7436591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 7753486 - 7753539
Alignment:
Q  154 aatgttgatccaccatagacatttggggttaaagttaacacccatggatttatt 207  Q
    ||||||||||||||||| |||||||| |||||||||||||||||  ||||||||    
T  7753486 aatgttgatccaccatatacatttggagttaaagttaacacccaaagatttatt 7753539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 286
Target Start/End: Original strand, 12359643 - 12359772
Alignment:
Q  158 ttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattg 256  Q
    ||||||||||||||||| ||  |||||||||||||| | | ||||||||||||| |||  |||||||  |||||||| ||| ||||  |||| |||||||    
T  12359643 ttgatccaccatagacacttaaggttaaagttaacagctacggatttatttggcgaacaaaggaaaaaatgagggaccaaaacgccaattttattaattg 12359742  T
Q  257 tggaaccaaaatgaaagtctgaaattattt 286  Q
    ||| || |||| ||||   |||||||||||    
T  12359743 tgggactaaaacgaaaacatgaaattattt 12359772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 18615627 - 18615542
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaagtctgaaatta 283  Q
    |||||||||||||||||||||||||||||  |||||||||  ||| | ||| |||||||||  |||||||||||| | ||||||||    
T  18615627 ggatttatttggcaaacggaggaaaatgtaggggactaaaaagccatttttattaattgtgagaccaaaatgaaaatatgaaatta 18615542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 29220881 - 29220966
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaagtctgaaatta 283  Q
    ||||| ||||||||||| ||||||||||| ||||||||||  ||| | ||| |||||||||| |||||||||||| | ||||||||    
T  29220881 ggattaatttggcaaacagaggaaaatgtaagggactaaaaagccatttttattaattgtgggaccaaaatgaaaatatgaaatta 29220966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 29334180 - 29334265
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaagtctgaaatta 283  Q
    ||||| ||||||||||| ||||||||||| ||||||||||  ||| | ||| |||||||||| |||||||||||| | ||||||||    
T  29334180 ggattaatttggcaaacagaggaaaatgtaagggactaaaaagccatttttattaattgtgggaccaaaatgaaaatatgaaatta 29334265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 309
Target Start/End: Original strand, 17460653 - 17460800
Alignment:
Q  162 tccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtgga 260  Q
    ||||||||||||||||   ||||||||||||   |  |||||||||||| |||||||||||||| |||||||| ||| ||   ||||| ||||||||||     
T  17460653 tccaccatagacatttaaagttaaagttaacggtcg-ggatttatttgggaaacggaggaaaatttgagggaccaaaacgtacgttttattaattgtggg 17460751  T
Q  261 accaaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    | ||||||||||   |||||||| || ||| ||||  ||||||||||||    
T  17460752 atcaaaatgaaaacttgaaattaattagaggaccattggatcaaataag 17460800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 17459362 - 17459276
Alignment:
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||||||||||||||| |||||||||| || ||   ||||| |||||||||  ||||||||||||   |||||||||||    
T  17459362 atttatttggcaaacggaggaaaaagtgagggacttaaacgtacgttttattaattgtgtgaccaaaatgaaaacttgaaattattt 17459276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 34469068 - 34468995
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcg-cctgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||| || ||||||||||||||||||| || | | ||| |||||||||  ||||||||||||    
T  34469068 gatttatttggcaaacagaagaaaatgtgagggactaaaacgtcatttttattaattgtgcgaccaaaatgaaa 34468995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 44192453 - 44192490
Alignment:
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  44192453 atttatttgacaaacggaggaaaatgtgagggactaaa 44192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 234
Target Start/End: Original strand, 43034433 - 43034511
Alignment:
Q  157 gttgatccaccatagacatttggg--gttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    |||||||||||||||||||||| |  |||||| |||||| | | | ||||||||| |||||||||||||| |||||||||    
T  43034433 gttgatccaccatagacatttgagaggttaaacttaacagcgaag-atttatttgacaaacggaggaaaaagtgagggac 43034511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 1085394 - 1085465
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||||||||||||  |||||||| ||| ||||  |||| |||| ||||| ||||||||||||    
T  1085394 gatttatttggcaaacggaggaaaa--tgagggaccaaaacgccaattttattaaatgtggtaccaaaatgaaa 1085465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 6030716 - 6030642
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||||||||||||  | ||| |||||| ||||  |||| |||||||||| || |||||||||    
T  6030716 ggatttatttggcaaacggaggaaaaaataaggaactaaaacgccaattttattaattgtgggactaaaatgaaa 6030642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 35903651 - 35903609
Alignment:
Q  167 catagacatttggggttaaagttaacacccatggatttatttg 209  Q
    |||||||||||||||||||| |||||| ||| |||||||||||    
T  35903651 catagacatttggggttaaacttaacagccaaggatttatttg 35903609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 32965750 - 32965705
Alignment:
Q  321 ttcattgaataactaatgtatctgacatatatataaaccggataca 366  Q
    ||||||||||||||||||||| || | |||||||| ||||||||||    
T  32965750 ttcattgaataactaatgtatttggcctatatatagaccggataca 32965705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 34167123 - 34166998
Alignment:
Q  60 aatagacctgcacgatccaatggtttatattttaaaacaaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgtt 159  Q
    ||||||||| ||  || |||| |||||| |||||| | | |||| ||| |||||| ||||| |||||| || | |||||| | ||| |||||||||||||    
T  34167123 aatagaccttcaaaattcaatagtttatgttttaacaaatagattaaacggttaagattaaaaaaattaatgatgtttacaatggatcatctataatgtt 34167024  T
Q  160 gatccaccatagacatttggggttaa 185  Q
    | |||| |  | ||||||||||||||    
T  34167023 ggtccatctaacacatttggggttaa 34166998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 360
Target Start/End: Original strand, 1220817 - 1220857
Alignment:
Q  320 attcattgaataactaatgtatctgacatatatataaaccg 360  Q
    |||||||||||||||||||||| |||| |||||||| ||||    
T  1220817 attcattgaataactaatgtatttgacctatatatagaccg 1220857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 368
Target Start/End: Original strand, 4860277 - 4860325
Alignment:
Q  320 attcattgaataactaatgtatctgacatatatataaaccggatacatt 368  Q
    ||||||||||||||| |||||||||   |||||||||||| ||||||||    
T  4860277 attcattgaataactgatgtatctggtctatatataaaccagatacatt 4860325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 98 - 309
Target Start/End: Complemental strand, 14471068 - 14470856
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggacca-tctataatgttgatccaccatagacatttggggttaaagttaacaccc 196  Q
    |||||||||| ||| |||||| | |||||| || ||||||| |  |||||| ||| ||| |||| ||||| |||||| |||||||||||| ||||||||     
T  14471068 aaagatcaaacggtcaaaatttaaaaaattaatgaagtttatggtggaccactct-taaggttggtccactatagacgtttggggttaaacttaacaccg 14470970  T
Q  197 atggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaacca 295  Q
    | |||||||||||||||||| ||||||| |||||||||| || ||   ||||| |||||||||| ||||||||||||   ||||||||||| | | ||||    
T  14470969 aaggatttatttggcaaacgaaggaaaaagtgagggacttaaccgtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggacca 14470870  T
Q  296 acggatcaaataag 309  Q
      ||||||||||||    
T  14470869 ttggatcaaataag 14470856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 16964043 - 16963871
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| |||||||||||||||||||||| |||| || || || ||||||  | ||| |||| |||| |||| |||||| | |||||||||||||  || |    
T  16964043 agatcgaagggttaaaattaacaaaattaataaggtctatgatggaccacttttaaggttggtccatcataaacatttagagttaaagttaacagtca-g 16963945  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
     ||||||||||||||||||||||||  |||||||||||| | || | ||| |||||||||| ||||||||||||    
T  16963944 catttatttggcaaacggaggaaaagatgagggactaaaacaccatttttattaattgtgggaccaaaatgaaa 16963871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 157 - 309
Target Start/End: Original strand, 15072753 - 15072906
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaatt 255  Q
    |||| ||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||  | |||||| |||  |   ||||| ||||||    
T  15072753 gttggtccaccatagacatttgaggttaaagttaacagacatggatttatttggcaaacggaggaaaaaataagggaccaaaatgtacgttttattaatt 15072852  T
Q  256 gtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    |||| ||||||||||||   |||||||| || ||| ||||  | ||||||||||    
T  15072853 gtgggaccaaaatgaaaacttgaaattaattagaggaccattgaatcaaataag 15072906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 101 - 309
Target Start/End: Original strand, 24499563 - 24499771
Alignment:
Q  101 gatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatgg 200  Q
    |||||||||||||||||| |  ||||| |||| |||||    | |||||||||||||||| ||||| ||||||||||| | |||||||| |||  |  ||    
T  24499563 gatcaaagggttaaaattgaataaattaataaggtttaacgtgaaccatctataatgttggtccacaatagacatttgagtttaaagttgacagac-cgg 24499661  T
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacgg 299  Q
    |||||||||| ||||||||||||| ||||||||| ||| ||   ||||| |||||||||  ||||||||||||   ||||||||||| | | ||||||      
T  24499662 atttatttggtaaacggaggaaaaagtgagggaccaaaacgtgagttttattaattgtgagaccaaaatgaaaacttgaaattatttaggggaccaacaa 24499761  T
Q  300 atcaaataag 309  Q
    ||||||||||    
T  24499762 atcaaataag 24499771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 15234046 - 15234120
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||||||||||||||||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  15234046 ggatttatttggcaaacggaggaaaatgtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaa 15234120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 309
Target Start/End: Complemental strand, 16123432 - 16123287
Alignment:
Q  165 accatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaacc 263  Q
    |||||||||||||| | ||||| |||||| ||| |||||||||||||||||||| |||||  |||||||||||| ||    |||| ||||||||||||||    
T  16123432 accatagacatttgagattaaacttaacaaccagggatttatttggcaaacggaagaaaaaatgagggactaaaacgtgaattttattaattgtggaacc 16123333  T
Q  264 aaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    |||||||||   | ||||||||| ||| | ||| | ||||||||||    
T  16123332 aaaatgaaaactttaaattatttagaggatcaatgaatcaaataag 16123287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 224
Target Start/End: Original strand, 41873875 - 41874001
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggacca-tctataatgttgatccaccatagacatttggggttaaagttaacaccc 196  Q
    |||||||||| |||||||||| | |||||| || |||| || |  |||||| ||| ||| |||| ||||||||||||||||| ||||||| |||||| ||    
T  41873875 aaagatcaaacggttaaaatttaaaaaattaatgaagtctatggtggaccactct-taaggttggtccaccatagacatttgtggttaaacttaacaacc 41873973  T
Q  197 atggatttatttggcaaacggaggaaaa 224  Q
    | |||||||||||| |||||||||||||    
T  41873974 aaggatttatttggtaaacggaggaaaa 41874001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 46110501 - 46110398
Alignment:
Q  90 tttaaaacaaagatcaaagggttaaaattaacaaaattgataaagtttacgacggacca-tctataatgttgatccaccatagacatttggggttaaagt 188  Q
    ||||||| |||||||||| ||||||||||||||||||| |||| || ||||| |||||| ||| ||| |||| ||||||||||| |||| | ||||||||    
T  46110501 tttaaaaaaaagatcaaacggttaaaattaacaaaattaataaggtctacgatggaccactct-taaggttggtccaccatagatatttagagttaaagt 46110403  T
Q  189 taaca 193  Q
    |||||    
T  46110402 taaca 46110398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 98 - 272
Target Start/End: Original strand, 30535574 - 30535748
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    |||||||| |||||||||||||| |||||  |||| || || |  |||| ||||||||||||| |||||||||||||||||  | ||||||||| |        
T  30535574 aaagatcagagggttaaaattaa-aaaataaataaggtctatggtggactatctataatgttggtccaccatagacatttgaagctaaagttaatagatg 30535672  T
Q  198 tggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||| |||||||||  | || ||||| |||||| ||   ||||| |||||| ||||||||||||||||    
T  30535673 tggatttatttgacaaacggagttagatttgaggaactaaaacgttggttttattaattatggaaccaaaatgaaa 30535748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 27814493 - 27814368
Alignment:
Q  109 ggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggtt-aaagttaacacccatggatttatt 207  Q
    ||||||||||||||||||| |||| |||||||| ||||||  | ||| |||| |||||||||||||||| | ||| ||||||||| |    |||||||||    
T  27814493 ggttaaaattaacaaaattaataaggtttacgatggaccacttttaaagttggtccaccatagacatttagagttaaaagttaac-cgtcgggatttatt 27814395  T
Q  208 tggcaaacggaggaaaatgtgagggac 234  Q
    |||||||| ||||||||  ||||||||    
T  27814394 tggcaaacagaggaaaaaatgagggac 27814368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 14477755 - 14477832
Alignment:
Q  158 ttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggact 235  Q
    |||||| ||||||||||||| | |||||| |||||| | | ||||||||||||||||||||| |||| ||||||||||    
T  14477755 ttgatctaccatagacatttagagttaaacttaacatcgaaggatttatttggcaaacggagaaaaaagtgagggact 14477832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 15232862 - 15232789
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||| |||||||||||||||||||||| |||| | ||| |||||| ||| ||||||||||||    
T  15232862 gatttatttggcaaacagaggaaaatgtgagggactaaaacgccatttttattaattatgggaccaaaatgaaa 15232789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 164 - 235
Target Start/End: Complemental strand, 41872722 - 41872651
Alignment:
Q  164 caccatagacatttgggg-ttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggact 235  Q
    |||||||||||||||||| ||||| |||||||| ||| |||||||||||||||||||||||| ||||| ||||    
T  41872722 caccatagacatttgggggttaaacttaacaccaatg-atttatttggcaaacggaggaaaaagtgagagact 41872651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 314
Target Start/End: Complemental strand, 23091505 - 23091346
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacaccc-atggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaat 254  Q
    |||| ||||||||||||||||| | ||||| ||||||  | | ||||||||||||||||||||| |||| ||||| ||| ||| ||   ||||| |||||    
T  23091505 gttggtccaccatagacatttgagattaaacttaacagactagggatttatttggcaaacggagaaaaaagtgagtgaccaaaacgtacgttttattaat 23091406  T
Q  255 tgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataagtcttt 314  Q
    |||  ||||||||||||| | |||||||| || | | |||||  ||||||||||| ||||    
T  23091405 tgtaaaaccaaaatgaaaatgtgaaattagttaggggaccaatagatcaaataagccttt 23091346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 35943410 - 35943485
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacaccca-tggatttatttggcaaacggaggaaaatgtgagg 231  Q
    |||| |||||||||||||||| |||||||| |||||| |||  |||||||||||||||||| ||||||| ||||||    
T  35943410 gttggtccaccatagacatttagggttaaacttaacagccaggggatttatttggcaaacgaaggaaaaagtgagg 35943485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 44999430 - 44999492
Alignment:
Q  162 tccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaa 224  Q
    ||||||||||||||||  |||||||||||||| | | ||||||||||||||||| ||||||||    
T  44999430 tccaccatagacatttaaggttaaagttaacagctagggatttatttggcaaacagaggaaaa 44999492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 46467303 - 46467222
Alignment:
Q  153 taatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    |||||||| ||||||||||||||||  ||||||| |||||| | | ||||||||||| |||||||||| |||  ||||||||    
T  46467303 taatgttggtccaccatagacatttatggttaaacttaacagcgagggatttatttgacaaacggaggcaaacctgagggac 46467222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 48492936 - 48492853
Alignment:
Q  102 atcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaa 186  Q
    ||||| |||| ||||||||||||||| ||||  | ||||  ||||||| |||||||||| |||||||||||||||||| ||||||    
T  48492936 atcaaggggtcaaaattaacaaaattaataagatctacggtggaccat-tataatgttggtccaccatagacatttggagttaaa 48492853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 46318584 - 46318642
Alignment:
Q  161 atccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggag 219  Q
    ||||| |||||||||||||||||||| |||||| ||| ||||||||||| || ||||||    
T  46318584 atccatcatagacatttggggttaaacttaacagccaaggatttatttgacagacggag 46318642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 49802900 - 49802974
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcg-cctgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||||||| ||||  |||||||||||| || | | ||| |||||||||| ||||||||||||    
T  49802900 ggatttatttggcaaacggagaaaaagatgagggactaaaacgtcatttttattaattgtgggaccaaaatgaaa 49802974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 44661797 - 44661840
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatctgacatatatata 355  Q
    |||||||| ||||||||||||||||||||||| || ||||||||    
T  44661797 ttttttaagttcattgaataactaatgtatcttacctatatata 44661840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 272
Target Start/End: Original strand, 51042311 - 51042421
Alignment:
Q  162 tccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtgga 260  Q
    |||| |||||||||||| ||||| | |||||   |||| |||||||||||||||||| |||||   ||||||||||| ||   ||||| ||||||||||     
T  51042311 tccatcatagacatttgaggttatacttaacggtcatgaatttatttggcaaacgga-gaaaaaaagagggactaaaacgtgagttttattaattgtggg 51042409  T
Q  261 accaaaatgaaa 272  Q
    ||||||||||||    
T  51042410 accaaaatgaaa 51042421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 193
Target Start/End: Complemental strand, 51445757 - 51445706
Alignment:
Q  143 ggaccatctataatgttgatccaccatagacattt-ggggttaaagttaaca 193  Q
    ||||||| | ||| ||||||||||||||||||||| ||||||||||||||||    
T  51445757 ggaccatttttaaagttgatccaccatagacatttgggggttaaagttaaca 51445706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 5613049 - 5613083
Alignment:
Q  159 tgatccaccatagacatttggggttaaagttaaca 193  Q
    |||||||||||| ||||||||||||||||||||||    
T  5613049 tgatccaccataaacatttggggttaaagttaaca 5613083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 193
Target Start/End: Complemental strand, 26286563 - 26286529
Alignment:
Q  159 tgatccaccatagacatttggggttaaagttaaca 193  Q
    |||||||||||| ||||||||||||||||||||||    
T  26286563 tgatccaccataaacatttggggttaaagttaaca 26286529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 15071455 - 15071418
Alignment:
Q  197 atggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  15071455 atggatttatttggtaaacggaggaaaaagtgagggac 15071418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 32693366 - 32693407
Alignment:
Q  152 ataatgttgatccaccatagacatttggggttaaagttaaca 193  Q
    ||||||||| |||||| |||||||||| ||||||||||||||    
T  32693366 ataatgttggtccaccctagacatttgtggttaaagttaaca 32693407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 120
Target Start/End: Complemental strand, 51299543 - 51299470
Alignment:
Q  47 cactgtaagttaaaatagacctgcacgatccaatggtttatattttaaaacaaagatcaaagggttaaaattaa 120  Q
    ||||||||| || |||||||| ||| ||||||||| ||   ||||||||  ||||||||||||||| |||||||    
T  51299543 cactgtaagatacaatagaccagcatgatccaatgattctcattttaaataaaagatcaaagggtttaaattaa 51299470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 353
Target Start/End: Complemental strand, 15497588 - 15497548
Alignment:
Q  313 tttttaaattcattgaataactaatgtatctgacatatata 353  Q
    |||||| | |||||||||||||||||||| |||||||||||    
T  15497588 tttttagactcattgaataactaatgtatatgacatatata 15497548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 16965134 - 16965206
Alignment:
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    |||||||||  ||||||| |||||||| |||||||||| || |  |||| |||||||||| ||||||||||||    
T  16965134 atttatttgataaacggaagaaaatgtaagggactaaaacgtcatttttattaattgtgggaccaaaatgaaa 16965206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 49801898 - 49801842
Alignment:
Q  28 aaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtt 84  Q
    ||||||| ||| |||||| ||  ||||| ||||||||||||||| ||||||||||||    
T  49801898 aaattagatgttggtggtacatcgtaagataaaatagacctgcatgatccaatggtt 49801842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 110 - 272
Target Start/End: Complemental strand, 27838118 - 27837957
Alignment:
Q  110 gttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttg 209  Q
    |||||||||||||||||| |||| || ||||| ||||||  | |||  ||| || ||||||||||||||  ||||| |||||||  || |||||||||||    
T  27838118 gttaaaattaacaaaattaataaggtctacgatggaccacttttaaaattggtctaccatagacatttgaagttaa-gttaacagtca-ggatttatttg 27838021  T
Q  210 gcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||| ||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  27838020 gcaaacggaggaaaaggtgagggactaaaacgccatatttattaattgtgggaccaaaatgaaa 27837957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 100 - 285
Target Start/End: Complemental strand, 38241114 - 38240930
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| ||||  | ||||| ||||||| | ||| |||| | |||||||||||||||| |||||| |||||| ||  |    
T  38241114 agatcgaatggttaaaattaacaaaattaataagctctacgatggaccatttttaa-gttggttcaccatagacatttggagttaaacttaacagccg-g 38241017  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatt 285  Q
    |||||||||||||||||||||||||| ||| ||||| || ||   ||||| |||||||||| |||||||| ||| | ||||||||||    
T  38241016 gatttatttggcaaacggaggaaaatctgaaggacttaaacgtacgttttattaattgtgggaccaaaataaaaatttgaaattatt 38240930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 312
Target Start/End: Complemental strand, 18442415 - 18442249
Alignment:
Q  143 ggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgc 242  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||| ||||||  |||| |||||||||||||   ||||||||  ||| |||||||| ||     
T  18442415 ggactatcgataatgttggtccaccatagacatttggggttaaacttaaca-acatgaatttatttggcaa---gaggaaaaaatgatggactaaaacgt 18442320  T
Q  243 ctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataagtct 312  Q
      ||||| |||||||||| ||||||||||||   ||||||||||| ||| ||||| ||||||||| |||||    
T  18442319 gggttttattaattgtgggaccaaaatgaaaacttgaaattatttagaggaccaatggatcaaatcagtct 18442249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 143 - 312
Target Start/End: Complemental strand, 19487489 - 19487323
Alignment:
Q  143 ggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgc 242  Q
    |||| ||| ||||||||| ||||||||||||||||||||||||| ||||||  |||| |||||||||||||   ||||||||  ||| |||||||| ||     
T  19487489 ggactatcgataatgttggtccaccatagacatttggggttaaacttaaca-acatgaatttatttggcaa---gaggaaaaaatgatggactaaaacgt 19487394  T
Q  243 ctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataagtct 312  Q
      ||||| |||||||||| ||||||||||||   ||||||||||| ||| ||||| ||||||||| |||||    
T  19487393 gggttttattaattgtgggaccaaaatgaaaacttgaaattatttagaggaccaatggatcaaatcagtct 19487323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 159 - 268
Target Start/End: Original strand, 53614237 - 53614348
Alignment:
Q  159 tgatccaccatagacatt---tggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaat 254  Q
    ||||||||||||||||||   |||||||||| ||||| ||  |||||||||||||||||  |||||||||||||||||||||| |||| ||||| |||||    
T  53614237 tgatccaccatagacattatttggggttaaacttaacgcc--tggatttatttggcaaatagaggaaaatgtgagggactaaaacgccagttttattaat 53614334  T
Q  255 tgtggaaccaaaat 268  Q
    ||||| ||||||||    
T  53614335 tgtgggaccaaaat 53614348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 24403451 - 24403329
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    |||||| ||| |||||||||| | |||||| |||| ||||| |  |||| ||||||||||||  | |||||||||||||| |||||||||||||||  ||    
T  24403451 aaagattaaatggttaaaattgaaaaaattaataaggtttatggtggactatctataatgttagttcaccatagacatttagggttaaagttaacaaaca 24403352  T
Q  198 tggatttatttggcaaacggagg 220  Q
    |||||||| ||| ||||||||||    
T  24403351 tggatttacttgacaaacggagg 24403329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 35372066 - 35372237
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| |||| || ||||| ||||||  | |||  ||| |||| ||||||||||||  ||||| |||||||   | |    
T  35372066 agatcgaatggttaaaattaacaaaattaataaggtctacgatggaccacttttaaaattggtccaacatagacatttgaagttaa-gttaacagtaa-g 35372163  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||| |||||||| ||||||||||||| |||| | ||| |||||||||  ||||||||||||    
T  35372164 gatttatttggcaaacagaggaaaaggtgagggactaaaacgccatttttattaattgtgagaccaaaatgaaa 35372237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 93 - 285
Target Start/End: Original strand, 53194770 - 53194962
Alignment:
Q  93 aaaacaaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaac 192  Q
    |||| ||| |||||| ||||||||| || |||||| || |||| || |  |||| |||||||||||   |||||||||||||||| | |||||| |||||    
T  53194770 aaaaaaaaaatcaaatggttaaaataaa-aaaattaatgaagtctatggtggactatctataatgtgagtccaccatagacattttgagttaaacttaac 53194868  T
Q  193 acccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatt 285  Q
    |  |||||||||||||||||||  |||||||| ||||||||| ||| ||   ||||| |||||| ||| ||||||||||||   ||||||||||    
T  53194869 agacatggatttatttggcaaatagaggaaaaagtgagggaccaaaacgtacgttttattaattatgggaccaaaatgaaaacttgaaattatt 53194962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 143 - 235
Target Start/End: Complemental strand, 40364486 - 40364394
Alignment:
Q  143 ggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggact 235  Q
    |||| ||||||||||||| | ||||||||||||||  ||||||| |||||||| | ||||||||||||||||||||| ||||  |||||||||    
T  40364486 ggactatctataatgttggttcaccatagacattttaggttaaacttaacaccgaaggatttatttggcaaacggagaaaaaaatgagggact 40364394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 308
Target Start/End: Original strand, 18458637 - 18458772
Alignment:
Q  174 atttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaa 272  Q
    ||||| ||||||| |||| | |||  ||||||||||||||||||||||||| ||||||||||||| |||  ||||| |||||||||| |||||||| |||    
T  18458637 atttgaggttaaacttaaaaaccagagatttatttggcaaacggaggaaaaagtgagggactaaaacgcaagttttattaattgtgggaccaaaataaaa 18458736  T
Q  273 gtctgaaattatttggagaaccaacggatcaaataa 308  Q
       ||||||||||| | | || || |||||||||||    
T  18458737 acttgaaattatttaggggactaatggatcaaataa 18458772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 40244395 - 40244187
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||||||| |||||||||||||||||| |||| || ||||| ||||||  | |||  ||| ||||||||||||| |||  ||||||||||||   ||      
T  40244395 agatcaaagagttaaaattaacaaaattaataaggtctacgatggaccacttttaagtttggtccaccatagacacttgaagttaaagttaactgtca-- 40244298  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacg 298  Q
     | ||||||||||||||||||||||| |||||||| |||  |   ||||| |||||||||  ||||||||||||   |||||||||||   | ||||| |    
T  40244297 aaattatttggcaaacggaggaaaatttgagggaccaaaatgtacgttttattaattgtgagaccaaaatgaaaacttgaaattatttaagggaccaatg 40244198  T
Q  299 gatcaaataag 309  Q
    |||||||||||    
T  40244197 gatcaaataag 40244187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 50809531 - 50809444
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    ||||||||||||||||||||||||| ||||||||||||| ||  |||||| |||||| ||| ||||||||||||   |||||||||||    
T  50809531 gatttatttggcaaacggaggaaaaagtgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattattt 50809444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 50866331 - 50866418
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    ||||||||||||||||||||||||| ||||||||||||| ||  |||||| |||||| ||| ||||||||||||   |||||||||||    
T  50866331 gatttatttggcaaacggaggaaaaagtgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattattt 50866418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 151 - 224
Target Start/End: Complemental strand, 36175421 - 36175349
Alignment:
Q  151 tataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaa 224  Q
    ||||||||||||||| |||||||||||||||||||| ||||||  |  ||||||||||||||||||||| ||||    
T  36175421 tataatgttgatccatcatagacatttggggttaaacttaacagtc-cggatttatttggcaaacggagaaaaa 36175349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 42685022 - 42684913
Alignment:
Q  164 caccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaac 262  Q
    ||||||||||||||||||||||| ||||||  || |||||||||||| ||||  || ||||  |||||||||||| || | ||||| || ||| ||||||    
T  42685022 caccatagacatttggggttaaacttaacagtcaaggatttatttggtaaacatagaaaaaaatgagggactaaaacgtcagttttattcattatggaac 42684923  T
Q  263 caaaatgaaa 272  Q
    ||||||||||    
T  42684922 caaaatgaaa 42684913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 314
Target Start/End: Original strand, 53624267 - 53624482
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    |||||||||| |||||||||| | |||||| |||| || || |  |||| ||||||||||||| ||||||||| |||||||||||||||  |||| |       
T  53624267 aaagatcaaaaggttaaaattga-aaaattaataaggtctatggtggactatctataatgttggtccaccatatacatttggggttaaacctaac-cgtc 53624364  T
Q  198 tggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaa 296  Q
    |||||||||||||||||| ||| |||| ||||| ||| |||  |   ||||| |||||||||  | ||||||||||   ||||||||||||  | ||||     
T  53624365 tggatttatttggcaaaccgagaaaaaagtgagtgaccaaaatgtacgttttattaattgtgagatcaaaatgaaaacttgaaattatttgagggaccat 53624464  T
Q  297 cggatcaaataagtcttt 314  Q
     |||||||||||| ||||    
T  53624465 tggatcaaataagccttt 53624482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 272
Target Start/End: Original strand, 10732136 - 10732208
Alignment:
Q  201 atttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||| ||||||||||||||||||||||||||| |||| | ||| |||||| ||| ||||||||||||    
T  10732136 atttatttggtaaacggaggaaaatgtgagggactaaaacgccatttttattaattatgggaccaaaatgaaa 10732208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 272
Target Start/End: Complemental strand, 10731096 - 10730922
Alignment:
Q  98 aaagatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacaccca 197  Q
    ||||||| || | ||||||||||||||||| |||| || || ||  |||||  | ||| |||| | |||||||||||||||  |||||||||||||  |     
T  10731096 aaagatcgaatgattaaaattaacaaaattaataaggtatatgatagaccacttttaaggttggttcaccatagacatttgaagttaaagttaacagtcg 10730997  T
Q  198 tggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
     ||||||||||||||||||||| |||| |||| |||| |||  ||| | ||| |||||| ||| ||||||||||||    
T  10730996 -ggatttatttggcaaacggagaaaaaagtgaaggaccaaaatgccatttttattaattatgggaccaaaatgaaa 10730922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 34818295 - 34818086
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccat- 198  Q
    ||||| || ||||||||||||||||||| |||| || || ||  || ||| | ||| ||||||| |||||||||||||   |||||||||||   | ||     
T  34818295 agatcgaacggttaaaattaacaaaattaataaggtctatgatagatcatttttaaggttgatcaaccatagacatttaaagttaaagttaa---ctatt 34818199  T
Q  199 -ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaa 296  Q
     |||||||||||||||| |||||||||| |||||||| ||| |    ||||| |||||||||| ||||||||||||   |||||||| || ||| ||||     
T  34818198 gggatttatttggcaaatggaggaaaatctgagggaccaaatcatacgttttattaattgtgggaccaaaatgaaaacttgaaattaattagaggaccat 34818099  T
Q  297 cggatcaaataag 309  Q
     | ||||||||||    
T  34818098 tgaatcaaataag 34818086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 50810840 - 50810927
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||||||||||||||||  |||||||||||| ||  |||||| |||||| ||| ||||||||||||   |||||||||||    
T  50810840 gatttatttggcaaacggaggaaaaaatgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattattt 50810927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 50865024 - 50864937
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||||||||||||||||  |||||||||||| ||  |||||| |||||| ||| ||||||||||||   |||||||||||    
T  50865024 gatttatttggcaaacggaggaaaaaatgagggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattattt 50864937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 100 - 178
Target Start/End: Original strand, 3209873 - 3209951
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttg 178  Q
    |||||||| ||||||||||||||||||| |||| |||||||| |||| || | ||| |||| ||||||||| |||||||    
T  3209873 agatcaaatggttaaaattaacaaaattaataaggtttacgatggactatttttaaggttggtccaccatatacatttg 3209951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 18197259 - 18197169
Alignment:
Q  198 tggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttg 287  Q
    |||||||||||||||||||||||||||  |||||||| |||  |   ||||| |||||||||| |||||||||||| | ||||||||||||    
T  18197259 tggatttatttggcaaacggaggaaaaaatgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaatttgaaattatttg 18197169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 53612982 - 53612908
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||| ||||||||||||||||| |||| |||| | ||| |||||| ||| ||||||||||||    
T  53612982 ggatttatttggcaaacagaggaaaatgtgagggaataaaacgccatttttattaattatgggaccaaaatgaaa 53612908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 20288178 - 20288239
Alignment:
Q  148 atctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttg 209  Q
    ||||||||||||| |||||||||||||||||| |||||| ||||||  || |||||||||||    
T  20288178 atctataatgttggtccaccatagacatttggagttaaacttaacagtcagggatttatttg 20288239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 20336606 - 20336682
Alignment:
Q  143 ggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggag 219  Q
    |||| ||||||||||||| |||| ||||||||||||| |||||| ||||||  |||| ||||||||| | |||||||    
T  20336606 ggactatctataatgttggtccaacatagacatttggagttaaacttaacagtcatgaatttatttgactaacggag 20336682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 21074108 - 21074267
Alignment:
Q  22 aaaaataaattagttgtaggtggtccactgtaagttaaaatagacctgcacgatccaatggtttatattt-taaaacaaagatcaaagggttaaaattaa 120  Q
    |||||| |||||||||| | ||   ||||||||| |||||||||| |||  ||| |||||||  || ||| | ||| ||| ||||||||||||||||| |    
T  21074108 aaaaattaattagttgttgttgactcactgtaagataaaatagacatgcgtgattcaatggtc-atctttcttaaaaaaatatcaaagggttaaaattga 21074206  T
Q  121 caaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttgggg 181  Q
     |||||| |||| || || |  |||| ||||||||||||| ||||||||| ||||||||||    
T  21074207 aaaaattaataaggtctatggtggactatctataatgttggtccaccatatacatttgggg 21074267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 173 - 286
Target Start/End: Original strand, 12107960 - 12108076
Alignment:
Q  173 catttggggttaaagttaacacccatggatt--tatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatg 269  Q
    |||||||||||||| ||||||||| ||  ||  ||||||||||||||||||||| ||||||||| |||     |||||| ||| |||||| |||||||||    
T  12107960 catttggggttaaatttaacacccgtgatttattatttggcaaacggaggaaaaagtgagggaccaaaatatatgttttattagttgtgggaccaaaatg 12108059  T
Q  270 aaagtctgaaattattt 286  Q
    |||   |||||||||||    
T  12108060 aaaacttgaaattattt 12108076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 37736089 - 37736174
Alignment:
Q  202 tttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattattt 286  Q
    |||||||||||||||||| |||| ||||||||||||| ||   ||||| |||||||||  ||||||||||||   |||||||||||    
T  37736089 tttatttggcaaacggagaaaaaagtgagggactaaaacgtacgttttattaattgtgagaccaaaatgaaaacatgaaattattt 37736174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 209
Target Start/End: Original strand, 20314672 - 20314779
Alignment:
Q  102 atcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatgga 201  Q
    |||||| |||| |||||||  ||||| |||| || || |  |||| ||||||||||||| || | ||||||||||||| |||||| ||||||  |||| |    
T  20314672 atcaaatggtttaaattaaataaattaataaggtctatggtggactatctataatgttggtctaacatagacatttggagttaaacttaacagtcatgaa 20314771  T
Q  202 tttatttg 209  Q
    ||||||||    
T  20314772 tttatttg 20314779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 41544774 - 41544737
Alignment:
Q  198 tggatttatttggcaaacggaggaaaatgtgagggact 235  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  41544774 tggatttatttggcaaacagaggaaaaagtgagggact 41544737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 368
Target Start/End: Complemental strand, 11534865 - 11534809
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacatt 368  Q
    ||||||| ||||||||||||  ||||||||||||| |||||||| |||  |||||||    
T  11534865 ttttttagattcattgaatatttaatgtatctgacctatatatagaccatatacatt 11534809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 21128130 - 21128046
Alignment:
Q  102 atcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaa 186  Q
    |||||| |||||||||||| ||| ||  ||| || || |  |||||| ||||||||||| |||||| ||||||||| ||||||||    
T  21128130 atcaaatggttaaaattaaaaaactttgtaaggtctatggtggaccacctataatgttggtccaccttagacatttagggttaaa 21128046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 345
Target Start/End: Original strand, 37914561 - 37914593
Alignment:
Q  313 tttttaaattcattgaataactaatgtatctga 345  Q
    ||||||||||||||| |||||||||||||||||    
T  37914561 tttttaaattcattggataactaatgtatctga 37914593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 100 - 272
Target Start/End: Complemental strand, 29380400 - 29380228
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| |||| || ||||| |||| |  | ||| |||||||||||||| |||||||  |||||| |||||   |  |    
T  29380400 agatcgaatggttaaaattaacaaaattaataaggtctacgatggactacttttaaggttgatccaccatatacatttgaagttaaaattaacggtcg-g 29380302  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  29380301 gatttatttggcaaacggaagaaaaggtgagggactaaaacgccatttttgttaattgtgggaccaaaatgaaa 29380228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 109 - 272
Target Start/End: Original strand, 23397270 - 23397433
Alignment:
Q  109 ggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttattt 208  Q
    ||||||||||||||||||| |||| || ||||  |||| |  | ||| |||| |||||||||||||||||  |||||| |||||   |  ||||||||||    
T  23397270 ggttaaaattaacaaaattaataaggtatacggtggactacttttaaggttggtccaccatagacatttgaagttaaatttaacggtcg-ggatttattt 23397368  T
Q  209 ggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||| ||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  23397369 ggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaa 23397433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 145 - 283
Target Start/End: Complemental strand, 6701544 - 6701406
Alignment:
Q  145 accatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc- 243  Q
    ||||||||||||||||| |||| ||||| ||||| |||||||||| |||   | | ||||||||||||||||||||||||||||||||||||||   ||     
T  6701544 accatctataatgttgacccacaatagatatttgaggttaaagttgacataaacg-atttatttggcaaacggaggaaaatgtgagggactaaaatacca 6701446  T
Q  244 tgttttttaattgtggaaccaaaatgaaagtctgaaatta 283  Q
    | ||| |||||||||| |||||||||||| | ||||||||    
T  6701445 tttttattaattgtgggaccaaaatgaaaatatgaaatta 6701406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 272
Target Start/End: Original strand, 17839046 - 17839218
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg 199  Q
    ||||| || ||||||||||||||||||| |||| || ||| | |||| |  | ||| ||| |||||||||  |||||||  |||||| |||||   |  |    
T  17839046 agatcgaatggttaaaattaacaaaattaataaggtctacaatggactacttttaaggttaatccaccatctacatttgaagttaaaattaacggtcg-g 17839144  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||||||||||| ||||||||||||| |||| | ||| |||||||||| ||||||||||||    
T  17839145 gatttatttggcaaacggaggaaaaggtgagggactaaaacgccatttttattaattgtgggaccaaaatgaaa 17839218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 32506989 - 32507070
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    |||| ||||||||||| ||||||||||||| ||||||  || ||||||||||||||||| ||| ||||||||||||||||||    
T  32506989 gttggtccaccatagatatttggggttaaacttaacagtcaaggatttatttggcaaactgagaaaaatgtgagggactaaa 32507070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 286
Target Start/End: Complemental strand, 232316 - 232199
Alignment:
Q  168 atagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaa 266  Q
    |||||||||| | |||||||||||||     |||||||||||||||||||||||||| ||||||||||||| ||  |||||| |||||| ||| ||||||    
T  232316 atagacatttagagttaaagttaacagtttgggatttatttggcaaacggaggaaaaagtgagggactaaaacg--tgttttattaattatgggaccaaa 232219  T
Q  267 atgaaagtctgaaattattt 286  Q
    ||||||   |||||||||||    
T  232218 atgaaaaattgaaattattt 232199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 272
Target Start/End: Complemental strand, 23392350 - 23392251
Alignment:
Q  173 catttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaa 271  Q
    |||||||||||||| ||||||   | |||||||||||||||||||||||||| |||||||||| || |||| | ||| |||||||||| |||||||||||    
T  23392350 catttggggttaaacttaacattta-ggatttatttggcaaacggaggaaaaggtgagggacttaaacgccatttttattaattgtgggaccaaaatgaa 23392252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 2687341 - 2687267
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| | ||| |||||||||| | ||||||||||    
T  2687341 ggatttatttggcaaacggaggaaaatgtgaaggactaaaacgccatttttattaattgtgggatcaaaatgaaa 2687267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 174 - 283
Target Start/End: Original strand, 6702852 - 6702960
Alignment:
Q  174 atttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||| |||||| ||||||  || |||||||||||||||||||||||||| |||||||| |||| |||| | ||| |||||||||| ||||||||||||    
T  6702852 atttggagttaaacttaacagtca-ggatttatttggcaaacggaggaaaacgtgaggga-taaaacgccatttttattaattgtgggaccaaaatgaaa 6702949  T
Q  273 gtctgaaatta 283  Q
     | ||||||||    
T  6702950 atatgaaatta 6702960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 6452516 - 6452627
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaac 297  Q
    ||||||||||||||||||||||||||  ||||||||| || ||   ||||| |||||| ||| ||||||||||||   ||||||||||| | | |||||     
T  6452516 ggatttatttggcaaacggaggaaaaaatgagggactcaaacgtacgttttattaattatgggaccaaaatgaaaacttgaaattatttaggggaccaat 6452615  T
Q  298 ggatcaaataag 309  Q
    ||||||||||||    
T  6452616 ggatcaaataag 6452627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 272
Target Start/End: Complemental strand, 17837728 - 17837653
Alignment:
Q  198 tggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||||| ||||||| |||||  |||||||||||| |||| | ||| |||||||||||||||||||||||    
T  17837728 tggatttatttggtaaacggaagaaaagatgagggactaaaacgccatttttattaattgtggaaccaaaatgaaa 17837653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 102 - 272
Target Start/End: Complemental strand, 29722871 - 29722700
Alignment:
Q  102 atcaaagggttaaaatt-aacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatg- 199  Q
    ||||||||| ||| ||| || |||||| ||||||| ||| | | |||||||||||||||| ||||| ||| |||||| || ||||| ||||||    ||     
T  29722871 atcaaagggctaacattgaataaaattaataaagtctacaatgaaccatctataatgttggtccacaatatacattttggattaaatttaacagt--tga 29722774  T
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    ||||||||||  ||| ||||||||||||||||||||||| |||| | ||| |||||| ||| | ||||||||||    
T  29722773 gatttatttgcaaaatggaggaaaatgtgagggactaaaacgccatttttattaattatgggatcaaaatgaaa 29722700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 2687926 - 2688003
Alignment:
Q  196 catggatttatttggcaaacggaggaaaatgtgagggactaaagcgcc-tgttttttaattgtggaaccaaaatgaaa 272  Q
    |||||||||||||||||||||||  |||| ||||||||||||| |||| | ||| |||||||||| || |||||||||    
T  2687926 catggatttatttggcaaacggataaaaaggtgagggactaaaacgccatttttattaattgtgggactaaaatgaaa 2688003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 12669876 - 12669795
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    |||| ||||||||| ||||||| ||||||||||||||   |  ||||||||| ||||||||||||||| |||| ||||||||    
T  12669876 gttggtccaccatacacatttgaggttaaagttaacagttagagatttatttagcaaacggaggaaaaagtgacggactaaa 12669795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 312 - 368
Target Start/End: Original strand, 3846461 - 3846517
Alignment:
Q  312 ttttttaaattcattgaataactaatgtatctgacatatatataaaccggatacatt 368  Q
    |||||||| |||||||||||| |||||||| |||| |||||||| ||||||||||||    
T  3846461 ttttttaagttcattgaataaataatgtatatgacctatatatagaccggatacatt 3846517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 6452395 - 6452356
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  6452395 ggatttatttggcaaacggaggaaaaagtgagggactaaa 6452356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 218
Target Start/End: Complemental strand, 15728897 - 15728822
Alignment:
Q  143 ggaccatctataatgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacgga 218  Q
    |||| ||||||||||||| ||||||||||| ||||| ||||||| |||||||| |  ||||||||||  |||||||    
T  15728897 ggactatctataatgttggtccaccatagatatttgaggttaaacttaacaccgaaagatttatttgataaacgga 15728822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 2271234 - 2271193
Alignment:
Q  313 tttttaaattcattgaataactaatgtatctgacatatatat 354  Q
    |||||| |||||||||| ||||||||||| ||||||||||||    
T  2271234 tttttagattcattgaacaactaatgtatttgacatatatat 2271193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 18346755 - 18346840
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaatta 283  Q
    ||||||||||||||||| |||  ||| ||||||||  ||| ||||  |||| |||||||||| |||||||||||| | ||||||||    
T  18346755 ggatttatttggcaaacagagacaaacgtgagggatcaaaacgccatttttattaattgtgggaccaaaatgaaaatatgaaatta 18346840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 32505810 - 32505773
Alignment:
Q  168 atagacatttggggttaaagttaacacccatggattta 205  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  32505810 atagacatttggggttaaacttaacaccgatggattta 32505773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 34024121 - 34024184
Alignment:
Q  250 ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataagtcttt 314  Q
    |||||||||| |||||||||||| | ||||||||||| ||||| ||  |||||||||||| ||||    
T  34024121 ttaattgtgggaccaaaatgaaaatttgaaattattt-gagaatcattggatcaaataagccttt 34024184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 309
Target Start/End: Complemental strand, 124121 - 123969
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaatt 255  Q
    |||| ||||||||||| ||||||||||||| ||||| |  | ||||||||||||||||| |||||||| ||||||||| |||  |   ||||| ||||||    
T  124121 gttggtccaccatagatatttggggttaaacttaac-cgtaaggatttatttggcaaacagaggaaaaagtgagggaccaaaatgtacgttttattaatt 124023  T
Q  256 gtggaaccaaaatgaaagtctgaaattatttggagaaccaacggatcaaataag 309  Q
    |||| ||||||||||||   |||||||||||| || ||||  ||||||||||||    
T  124022 gtgggaccaaaatgaaaacttgaaattatttgaaggaccattggatcaaataag 123969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 125238 - 125349
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaac 297  Q
    |||||||||||||||||||||||||| ||||||||| |||  |   ||||| |||||||||| |||||||||||| | ||||||||||||  | ||||      
T  125238 ggatttatttggcaaacggaggaaaaagtgagggaccaaaaggtacgttttattaattgtgggaccaaaatgaaaatttgaaattatttgagggaccatt 125337  T
Q  298 ggatcaaataag 309  Q
    ||||||||||||    
T  125338 ggatcaaataag 125349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 155 - 234
Target Start/End: Original strand, 1046 - 1125
Alignment:
Q  155 atgttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggac 234  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |  |||||||  ||| ||||||||    
T  1046 atgttggtccaccatagacatttggggttaaagttaacacccatgaatttatttgactgacggaggtgaatttgagggac 1125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 309
Target Start/End: Original strand, 54191 - 54301
Alignment:
Q  200 gatttatttggcaaacggaggaaaatgtgagggactaaagcgcctgtttt-ttaattgtggaaccaaaatgaaagtctgaaattatttggagaaccaacg 298  Q
    |||||||||||||||||||||||||| |||||||| ||| |||  ||||| |||||||||  |||||||| |||   ||||||||||||  | ||||| |    
T  54191 gatttatttggcaaacggaggaaaatttgagggaccaaaacgcacgttttattaattgtgcgaccaaaattaaaacttgaaattatttgagggaccaatg 54290  T
Q  299 gatcaaataag 309  Q
    |||||||||||    
T  54291 gatcaaataag 54301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 21280 - 21213
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaacacccatggatttatttggcaaacggaggaaaa 224  Q
    |||| ||||||||||||||||| ||||||| |||||| | |  |||||||||||||||||||||||||    
T  21280 gttggtccaccatagacatttgtggttaaacttaacaacgaatgatttatttggcaaacggaggaaaa 21213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 191
Target Start/End: Original strand, 109652 - 109743
Alignment:
Q  100 agatcaaagggttaaaattaacaaaattgataaagtttacgacggaccatctataatgttgatccaccatagacatttggggttaaagttaa 191  Q
    |||||||| ||||||||||||||||||| |||| || ||||| |||| || | ||| |||| ||||||||| |||||||  |||||||||||    
T  109652 agatcaaatggttaaaattaacaaaattaataaggtctacgatggactatttttaaggttggtccaccatatacatttgaagttaaagttaa 109743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 225
Target Start/End: Original strand, 726 - 776
Alignment:
Q  174 atttggggttaaagttaacacccatggatttatttggcaaacggaggaaaat 225  Q
    ||||||||||||||||||||  || |||||||| ||||||||||||||||||    
T  726 atttggggttaaagttaacagtca-ggatttatatggcaaacggaggaaaat 776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 192
Target Start/End: Original strand, 8153 - 8188
Alignment:
Q  157 gttgatccaccatagacatttggggttaaagttaac 192  Q
    |||||||||||||||||||||||||||||| |||||    
T  8153 gttgatccaccatagacatttggggttaaaattaac 8188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 18923 - 18884
Alignment:
Q  199 ggatttatttggcaaacggaggaaaatgtgagggactaaa 238  Q
    ||||||||||||||||||||| |||| |||||||||||||    
T  18923 ggatttatttggcaaacggagtaaaaagtgagggactaaa 18884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 313 - 351
Target Start/End: Original strand, 4743 - 4781
Alignment:
Q  313 tttttaaattcattgaataactaatgtatctgacatata 351  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  4743 tttttaaattcattgaataactaatgtatttgatatata 4781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 43541 - 43616
Alignment:
Q  162 tccaccatagacat---ttggggttaaagttaacacccatggatttatttggcaaacggaggaaaatgtgagggact 235  Q
    ||||||||||||||   ||||||||||| |||||   || ||| |||||||||||||||||||||| ||||||||||    
T  43541 tccaccatagacatcacttggggttaaacttaaccgtca-ggacttatttggcaaacggaggaaaaagtgagggact 43616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University