View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20422_high_4 (Length: 325)
Name: NF20422_high_4
Description: NF20422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20422_high_4 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 110 - 308
Target Start/End: Original strand, 6791906 - 6792105
Alignment:
| Q |
110 |
ccaaaattttgcgtaaaaagcttttaacagcttggaaaggaataaaaaattggtccatagttcctttgggaagaattttctatgaattcaagtttagctc |
209 |
Q |
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| T |
6791906 |
ccaaaattctgggtgaaaagcttttgacagcttggaaaggaatgaaaaattggtcctgagttccttagggaagaggtttctatcaattcaagtttagcac |
6792005 |
T |
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| Q |
210 |
agttgaaggtatgagtaaagtttggtccctgcgagtggtg-aacctcaaaccagggtttatgcatttcttctgttggatgaagaacttcaagccacaaaa |
308 |
Q |
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| T |
6792006 |
agttgaagatatgcgtaaagtttggtccctgcgtttggtgaaacctcaaaccagggttgatacgtttcttctgttggatgaagaacttcaagccacaaaa |
6792105 |
T |
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Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 6527801 - 6527897
Alignment:
| Q |
12 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
108 |
Q |
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| T |
6527801 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
6527897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 6555367 - 6555463
Alignment:
| Q |
12 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
108 |
Q |
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| T |
6555367 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
6555463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 6521061 - 6521157
Alignment:
| Q |
12 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
108 |
Q |
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| T |
6521061 |
aagaatatgggaaagctaagtaatcttcagaccctgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
6521157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 6735065 - 6734973
Alignment:
| Q |
16 |
atatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
108 |
Q |
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| T |
6735065 |
atatgggaaagctaaacaatcttcaaagcctatcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
6734973 |
T |
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Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 8453761 - 8453673
Alignment:
| Q |
20 |
gggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
108 |
Q |
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| T |
8453761 |
gggaaagctaaacaatcttcaaagcttgtcatattttattgtggaagagcagaatgtatctgatcttaaagagttggcaaaactaaacc |
8453673 |
T |
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Target: scaffold0425 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 12 - 108
Target Start/End: Original strand, 8406 - 8502
Alignment:
| Q |
12 |
aagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
108 |
Q |
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| T |
8406 |
aagaatatgggaaagctaaataatcttcagaccatgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaactcaacc |
8502 |
T |
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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 2623664 - 2623761
Alignment:
| Q |
5 |
gatgtcgaagaatatgggaaagctaaataatcttcagaccttgtcatattttattgtggaagcccataatgaatctgatctcaaagatttggcaaaac |
102 |
Q |
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| T |
2623664 |
gatgtcaaagcatatgggaaagctaaacaatcttcaaagcatgttatattttattggggaagagcataatggatctgatcttaaagagttggcaaaac |
2623761 |
T |
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