View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20422_high_8 (Length: 205)

Name: NF20422_high_8
Description: NF20422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20422_high_8
NF20422_high_8
[»] chr6 (4 HSPs)
chr6 (1-71)||(164294-164364)
chr6 (65-112)||(164392-164439)
chr6 (111-158)||(31665652-31665699)
chr6 (117-181)||(15296151-15296215)
[»] chr4 (4 HSPs)
chr4 (1-71)||(18208045-18208115)
chr4 (65-112)||(18207970-18208017)
chr4 (109-185)||(12094852-12094927)
chr4 (111-156)||(4883609-4883654)
[»] chr5 (4 HSPs)
chr5 (111-189)||(22482581-22482658)
chr5 (108-181)||(37337320-37337393)
chr5 (111-185)||(26110688-26110762)
chr5 (110-156)||(36434662-36434708)
[»] chr1 (4 HSPs)
chr1 (109-161)||(24819181-24819233)
chr1 (109-160)||(15700719-15700770)
chr1 (111-158)||(22964007-22964054)
chr1 (111-162)||(44508601-44508652)
[»] chr2 (2 HSPs)
chr2 (111-160)||(32281486-32281535)
chr2 (111-183)||(28926075-28926146)
[»] chr3 (3 HSPs)
chr3 (111-181)||(1529165-1529235)
chr3 (111-181)||(15291461-15291529)
chr3 (111-158)||(49235500-49235547)
[»] chr8 (4 HSPs)
chr8 (111-181)||(23828343-23828413)
chr8 (111-158)||(42315342-42315389)
chr8 (111-158)||(45244308-45244355)
chr8 (111-180)||(7496758-7496827)


Alignment Details
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 164294 - 164364
Alignment:
Q  1 tgcattagtaattgctgtttgggtagtagttgctgcacgggaaatatacatcattgaatatgtgtagttgg 71  Q
    |||||||||||||||||| |||||||||||||||  | || ||||||||||||||||||||||||||||||    
T  164294 tgcattagtaattgctgtatgggtagtagttgctcaatggaaaatatacatcattgaatatgtgtagttgg 164364  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 164392 - 164439
Alignment:
Q  65 tagttggagtgttttgggggaaatttgaatttgaacatatgcattaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  164392 tagttggagtgttttgggggaaatttgaatttgaacatatgcactaat 164439  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 31665699 - 31665652
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    ||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  31665699 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatt 31665652  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 15296151 - 15296215
Alignment:
Q  117 cttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctcca 181  Q
    |||||||||| |||||| |||||||||| | |||||||||||||| ||| |||| |||||||||||    
T  15296151 cttactaaagcttgttttgtcaagctataagtaaccctaatttttaacc-taatattttccctcca 15296215  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 18208115 - 18208045
Alignment:
Q  1 tgcattagtaattgctgtttgggtagtagttgctgcacgggaaatatacatcattgaatatgtgtagttgg 71  Q
    |||||||||||||||||| |||||||||||||||  | || ||||||||||||||||||||||||||||||    
T  18208115 tgcattagtaattgctgtatgggtagtagttgctcaatggaaaatatacatcattgaatatgtgtagttgg 18208045  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 18208017 - 18207970
Alignment:
Q  65 tagttggagtgttttgggggaaatttgaatttgaacatatgcattaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18208017 tagttggagtgttttgggggaaatttgaatttgaacatatgcactaat 18207970  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 12094927 - 12094852
Alignment:
Q  109 taatcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctccacttt 185  Q
    ||||||| |||||||||| |||||||||||||||||||  ||||||||  ||||| |||||| |||||||||||||||    
T  12094927 taatctttcttactaaagcttgtttggtcaagctattagaaaccctaa--ttttaacctaatattttccctccacttt 12094852  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 4883654 - 4883609
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaa 156  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||    
T  4883654 atcttacttactaaagcttgttaggtcaagctattcctaaccctaa 4883609  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 22482658 - 22482581
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctccactttgaaa 189  Q
    |||||| ||||||||| |||| ||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||    
T  22482658 atcttatttactaaagcttgtctggtcaagcaatt-ctcaacctaattttttaccctaatttttccctccactttgaaa 22482581  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 37337320 - 37337393
Alignment:
Q  108 ttaatcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctcca 181  Q
    |||||||| |||||||||| ||||||||||||||||| | |||||||||||||| ||| |||| |||||||||||    
T  37337320 ttaatctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacc-taatattttccctcca 37337393  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 26110688 - 26110762
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctccacttt 185  Q
    ||||| |||||||||  ||||||||||||||||| | ||||||||| |||||| |||||| |||||||||||||||    
T  26110688 atctttcttactaaaacttgtttggtcaagctataagtaaccctaa-tttttaacctaatattttccctccacttt 26110762  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 36434708 - 36434662
Alignment:
Q  110 aatcttacttactaaagtttgtttggtcaagctattactaaccctaa 156  Q
    |||||||||||||||||||||| |||||||||||   ||||||||||    
T  36434708 aatcttacttactaaagtttgtctggtcaagctaaccctaaccctaa 36434662  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 24819181 - 24819233
Alignment:
Q  109 taatcttacttactaaagtttgtttggtcaagctattactaaccctaattttt 161  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  24819181 taatcttacttaccaaagcttgtttggtcaagctattactaaccctaattttt 24819233  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 15700719 - 15700770
Alignment:
Q  109 taatcttacttactaaagtttgtttggtcaagctattactaaccctaatttt 160  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  15700719 taatctttcttactaaagtttgtttggtcaagctattagtaaccctaatttt 15700770  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 22964007 - 22964054
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    |||||||||||||||| |||| |||||||||||||  |||||||||||    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaatt 22964054  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 44508601 - 44508652
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatttttt 162  Q
    ||||| ||| |||||| |||| || |||||||||||||||||||||||||||    
T  44508601 atctttctttctaaagcttgtctgatcaagctattactaaccctaatttttt 44508652  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 32281486 - 32281535
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatttt 160  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  32281486 atctttcttactaaagtttgtttggtcaagctattagtaaccctaatttt 32281535  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 28926075 - 28926146
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctccact 183  Q
    ||||| |||||||||| |||| |||||||||||||| ||||||||| || ||| |||||||||||||||||||    
T  28926075 atctttcttactaaagcttgtctggtcaagctattagtaaccctaa-ttcttaacctaatttttccctccact 28926146  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 1529165 - 1529235
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctcca 181  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||||||| || |||  | ||||||||||||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctcca 1529235  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 15291461 - 15291529
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctcca 181  Q
    ||||| |||||||||| ||||||||||||||||||  | |||||||  | ||| |||||||||||||||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaa--tcttaacctaatttttccctcca 15291529  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 49235547 - 49235500
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    ||||| |||||||||||||||||||||||||||| | | |||||||||    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaatt 49235500  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 23828343 - 23828413
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctcca 181  Q
    ||||| ||||||| || ||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacc-taatattttccctcca 23828413  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 42315342 - 42315389
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    ||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  42315342 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatt 42315389  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 45244355 - 45244308
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  45244355 atctttcttactaaagtttgtctggtcaagctattagtaaccctaatt 45244308  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 7496758 - 7496827
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctcc 180  Q
    ||||| |||||||||| ||||||| |||||||||  || |||||||| ||| | |||| |||||||||||    
T  7496758 atctttcttactaaagcttgtttgatcaagctatagctgaccctaatatttaaacctattttttccctcc 7496827  T

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