View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20422_low_1 (Length: 891)
Name: NF20422_low_1
Description: NF20422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20422_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 568; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 198 - 875
Target Start/End: Complemental strand, 5113086 - 5112424
Alignment:
| Q |
198 |
aacaatgatcaaaaccttaaatccatacccaaatccagcaaaaacagctgagattatgtcaaggtatagaccaatagcaccaaagccagaaacatgttca |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5113086 |
aacaatgatcaaaaccttaaatccatacccaaatccagcaaaaacagctgagattatgtcaaggtatagaccaatagcaccaaagccagaaacatgttca |
5112987 |
T |
|
| Q |
298 |
agtaacaattcaacgagtgatggatcttcatcatcaaactcactttctcaaaagatcaaacaatctccttaccttaggaatctttggccacagttacaag |
397 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112986 |
agtaacaattcaactagtgatggatcttcatcatcaaactcactttctcaaaagatcaaacaatctccttaccttaggaatctttggccacagttacaag |
5112887 |
T |
|
| Q |
398 |
caagaccaacaaggacaagaaagagaggtagagctcctatttcactaccctcttctttgaaaagacaaaaaacacatgtcttaggtttttgtcaaccttt |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112886 |
caagaccaacaaggacaagaaagagaggtagagctcctatttcactaccctcttctttgaaaagacaaaaaacacatgtcttaggtttttgtcaaccttt |
5112787 |
T |
|
| Q |
498 |
gcatgtaacatctccaataaaaaaccttactttacaaggtaattttgttcctccttcttcacttcctcaactccctcttccaaatcatggagttggagtt |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112786 |
gcatgtaacatctccaataaaaaaccttactttacaaggtaattttgttcctccttcttcacttcctcaactccctcttccaaatcatggagttggagtt |
5112687 |
T |
|
| Q |
598 |
ctcaattgcaacaatttggacaaaaattcaactactaatccaaatttagtaacactccctcttcttccttgttctcctaattcaccnnnnnnnnnnnnnn |
697 |
Q |
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| T |
5112686 |
ctcaattgca---------acaaaaattcaactactaatccaaatttagtaacactccctcttcttccttgttctcctaattcacc------taataata |
5112602 |
T |
|
| Q |
698 |
nnnnngcaccaaaatttgaactagaggtgatagatttgaacaacactaaagtggaagttccacaagagagggatcttttgcaacaactacaaaaaccagc |
797 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5112601 |
ataatgcattaaaatttgaactagaggtgatagatttgaacaacactaaagtggaagttccacaagagagggatcttttgcaacaactacaaaaaccagc |
5112502 |
T |
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| Q |
798 |
ttctagcaccaacaatgtcatcaatgtgatcgcgccgcaaccgattcgaccaattggttcatgcataaatgttggttg |
875 |
Q |
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| T |
5112501 |
ttctagcaccaacaatgtcatcaatgtgatctcgccgcaaccgattcgaccaattggttcatgcataaatgttggttg |
5112424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 5113237 - 5113085
Alignment:
| Q |
18 |
taacataacataacat---atagccacaca-tttgacaccgtaacctccctttcaatccaac-----acactatcttcctcctctttataactaaccact |
108 |
Q |
| |
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|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| ||| |
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| T |
5113237 |
taacataacataacataacatagccacacattttgacaccgtaacctccctttcaatccaacatactacactatcctcctcctctttataacgaacgact |
5113138 |
T |
|
| Q |
109 |
ctttctcacatccttcttcactctcactgtatgtattgttaccttcctcacaaatataa |
167 |
Q |
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||||||||||||| ||||||||| |||| | ||||||||||||||||||| |||| |
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| T |
5113137 |
ctttctcacatcc----tcactctcattgta--ttttgttaccttcctcacaaaaataa |
5113085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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