View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20422_low_10 (Length: 231)

Name: NF20422_low_10
Description: NF20422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20422_low_10
NF20422_low_10
[»] chr4 (43 HSPs)
chr4 (20-191)||(6487283-6487454)
chr4 (13-191)||(40162749-40162926)
chr4 (18-191)||(9972738-9972911)
chr4 (19-163)||(51967243-51967387)
chr4 (18-163)||(26448596-26448741)
chr4 (18-190)||(29966362-29966520)
chr4 (18-162)||(8563352-8563496)
chr4 (18-188)||(40487632-40487796)
chr4 (13-163)||(56423968-56424118)
chr4 (46-191)||(54561212-54561365)
chr4 (18-153)||(21486480-21486615)
chr4 (46-162)||(23170725-23170841)
chr4 (54-150)||(42937417-42937513)
chr4 (52-150)||(29469162-29469260)
chr4 (13-129)||(25013406-25013522)
chr4 (12-110)||(3860230-3860328)
chr4 (12-110)||(3868987-3869085)
chr4 (52-150)||(8084208-8084306)
chr4 (51-185)||(24966491-24966624)
chr4 (18-163)||(21306298-21306443)
chr4 (51-185)||(50517191-50517324)
chr4 (58-163)||(41470328-41470424)
chr4 (57-147)||(23671383-23671473)
chr4 (24-182)||(26955301-26955464)
chr4 (19-148)||(871776-871905)
chr4 (25-151)||(14334366-14334492)
chr4 (53-150)||(54341591-54341688)
chr4 (52-150)||(29855964-29856062)
chr4 (53-150)||(29510072-29510169)
chr4 (155-191)||(8563313-8563349)
chr4 (51-130)||(33138798-33138877)
chr4 (55-150)||(41725564-41725659)
chr4 (51-150)||(46286707-46286806)
chr4 (52-150)||(23987645-23987742)
chr4 (52-150)||(49501188-49501286)
chr4 (52-150)||(49507253-49507351)
chr4 (53-150)||(5441851-5441948)
chr4 (95-160)||(25842993-25843058)
chr4 (52-150)||(28484343-28484442)
chr4 (54-162)||(26491117-26491225)
chr4 (53-149)||(27768513-27768609)
chr4 (86-150)||(37828085-37828149)
chr4 (86-150)||(48261560-48261624)
[»] chr1 (37 HSPs)
chr1 (13-191)||(7798481-7798659)
chr1 (18-182)||(1108338-1108500)
chr1 (22-163)||(34019109-34019250)
chr1 (18-163)||(34751562-34751707)
chr1 (18-190)||(18954451-18954613)
chr1 (60-163)||(33886850-33886953)
chr1 (60-163)||(33957297-33957400)
chr1 (52-150)||(8147337-8147435)
chr1 (52-150)||(4005087-4005185)
chr1 (53-150)||(11579103-11579200)
chr1 (55-150)||(1243309-1243404)
chr1 (52-150)||(9192044-9192142)
chr1 (52-150)||(41353441-41353539)
chr1 (52-150)||(51106912-51107010)
chr1 (52-150)||(26757635-26757733)
chr1 (53-182)||(47371547-47371675)
chr1 (25-77)||(29027978-29028030)
chr1 (52-150)||(15834687-15834785)
chr1 (57-150)||(5209371-5209464)
chr1 (54-147)||(48966497-48966590)
chr1 (89-184)||(42304470-42304564)
chr1 (17-138)||(21248490-21248611)
chr1 (155-190)||(34019261-34019296)
chr1 (52-173)||(49971576-49971697)
chr1 (155-188)||(33957411-33957444)
chr1 (54-150)||(48177095-48177192)
chr1 (89-148)||(52182383-52182443)
chr1 (86-149)||(15927353-15927416)
chr1 (52-150)||(5494751-5494849)
chr1 (54-184)||(28403916-28404045)
chr1 (53-150)||(6313024-6313121)
chr1 (53-150)||(8140886-8140983)
chr1 (53-150)||(25612540-25612637)
chr1 (53-150)||(29396087-29396184)
chr1 (53-150)||(45273015-45273112)
chr1 (53-145)||(49236974-49237066)
chr1 (86-150)||(51702076-51702140)
[»] chr7 (29 HSPs)
chr7 (18-191)||(35313522-35313695)
chr7 (1-163)||(34656553-34656715)
chr7 (22-191)||(21024035-21024203)
chr7 (18-191)||(38910446-38910619)
chr7 (13-163)||(14732285-14732435)
chr7 (18-163)||(19594176-19594320)
chr7 (26-191)||(37392597-37392751)
chr7 (29-160)||(1254461-1254592)
chr7 (52-150)||(14741425-14741523)
chr7 (65-158)||(6268513-6268606)
chr7 (52-150)||(4639877-4639975)
chr7 (155-191)||(14732228-14732264)
chr7 (52-150)||(48136889-48136987)
chr7 (53-150)||(29614456-29614553)
chr7 (86-150)||(23017025-23017089)
chr7 (86-150)||(47067190-47067254)
chr7 (54-148)||(11735194-11735289)
chr7 (52-139)||(12740816-12740903)
chr7 (18-148)||(26201794-26201925)
chr7 (53-139)||(33497107-33497193)
chr7 (52-150)||(40460375-40460473)
chr7 (53-150)||(510093-510190)
chr7 (52-161)||(28034498-28034607)
chr7 (53-150)||(28342758-28342855)
chr7 (53-130)||(37915919-37915996)
chr7 (53-150)||(39784554-39784651)
chr7 (53-150)||(44256416-44256513)
chr7 (155-191)||(19594331-19594367)
chr7 (86-150)||(29893452-29893516)
[»] chr6 (21 HSPs)
chr6 (22-191)||(8779545-8779712)
chr6 (22-163)||(31996238-31996379)
chr6 (18-163)||(21199519-21199664)
chr6 (18-163)||(7835363-7835499)
chr6 (19-184)||(12028941-12029105)
chr6 (52-150)||(1463674-1463772)
chr6 (52-150)||(6788099-6788197)
chr6 (52-145)||(10113788-10113881)
chr6 (18-162)||(21010868-21011012)
chr6 (57-150)||(3000244-3000337)
chr6 (155-191)||(7835316-7835352)
chr6 (54-147)||(31975658-31975751)
chr6 (54-150)||(2606896-2606992)
chr6 (86-150)||(14262092-14262156)
chr6 (53-145)||(31535068-31535160)
chr6 (105-150)||(24194465-24194511)
chr6 (54-139)||(13461374-13461459)
chr6 (53-150)||(31067880-31067977)
chr6 (86-150)||(4200107-4200171)
chr6 (24-151)||(15381513-15381641)
chr6 (86-150)||(31896118-31896182)
[»] chr2 (34 HSPs)
chr2 (18-191)||(38413409-38413590)
chr2 (19-163)||(13898442-13898586)
chr2 (19-163)||(14039059-14039203)
chr2 (46-163)||(3991766-3991883)
chr2 (22-163)||(19948507-19948648)
chr2 (18-163)||(33262818-33262963)
chr2 (84-191)||(45161096-45161203)
chr2 (19-174)||(41978803-41978956)
chr2 (19-130)||(12877652-12877763)
chr2 (18-162)||(11153342-11153486)
chr2 (52-150)||(18899932-18900030)
chr2 (57-150)||(15224234-15224327)
chr2 (18-163)||(43318752-43318885)
chr2 (56-151)||(30850271-30850365)
chr2 (53-150)||(35404323-35404420)
chr2 (58-161)||(37810876-37810979)
chr2 (52-150)||(10657878-10657976)
chr2 (52-150)||(40829635-40829733)
chr2 (57-150)||(2308718-2308811)
chr2 (65-162)||(24025860-24025957)
chr2 (86-182)||(18727620-18727715)
chr2 (155-191)||(33262974-33263010)
chr2 (53-150)||(7027352-7027449)
chr2 (53-150)||(18177720-18177817)
chr2 (53-148)||(15926378-15926474)
chr2 (86-162)||(26789267-26789343)
chr2 (109-161)||(28545802-28545854)
chr2 (52-150)||(28739950-28740048)
chr2 (18-90)||(28545725-28545795)
chr2 (134-163)||(34138068-34138097)
chr2 (86-150)||(3575323-3575387)
chr2 (163-191)||(13898605-13898633)
chr2 (163-191)||(14039222-14039250)
chr2 (86-150)||(43825322-43825386)
[»] chr8 (14 HSPs)
chr8 (13-191)||(28317025-28317212)
chr8 (20-191)||(41252131-41252311)
chr8 (18-163)||(33177838-33177983)
chr8 (18-157)||(1527901-1528040)
chr8 (52-150)||(19484214-19484312)
chr8 (20-172)||(4871091-4871243)
chr8 (53-184)||(8029811-8029941)
chr8 (109-162)||(12522425-12522478)
chr8 (52-150)||(9288149-9288247)
chr8 (55-148)||(17234716-17234810)
chr8 (52-150)||(43166331-43166429)
chr8 (86-150)||(14781787-14781851)
chr8 (114-150)||(26620349-26620385)
chr8 (86-150)||(44725446-44725510)
[»] chr3 (29 HSPs)
chr3 (18-163)||(9818555-9818700)
chr3 (23-163)||(40064248-40064388)
chr3 (25-190)||(49293775-49293948)
chr3 (20-162)||(37832539-37832681)
chr3 (13-191)||(27261367-27261531)
chr3 (25-135)||(53645332-53645442)
chr3 (18-184)||(19386863-19387026)
chr3 (52-150)||(49296115-49296213)
chr3 (52-150)||(8598658-8598756)
chr3 (18-173)||(30238477-30238632)
chr3 (18-160)||(29690597-29690738)
chr3 (86-160)||(47467405-47467479)
chr3 (52-150)||(53835961-53836059)
chr3 (51-150)||(16155162-16155261)
chr3 (53-183)||(4962703-4962832)
chr3 (52-150)||(21386488-21386586)
chr3 (53-150)||(22489488-22489585)
chr3 (52-150)||(50761756-50761854)
chr3 (18-163)||(2118437-2118572)
chr3 (18-139)||(7665556-7665677)
chr3 (18-130)||(9031942-9032054)
chr3 (86-182)||(33693289-33693384)
chr3 (155-191)||(53645267-53645303)
chr3 (18-148)||(25049845-25049967)
chr3 (52-150)||(37455293-37455391)
chr3 (53-150)||(49458358-49458455)
chr3 (53-150)||(50902965-50903062)
chr3 (86-150)||(36673808-36673872)
chr3 (86-173)||(45602399-45602485)
[»] chr5 (24 HSPs)
chr5 (20-184)||(21238729-21238893)
chr5 (22-163)||(2675065-2675206)
chr5 (22-162)||(33892834-33892974)
chr5 (18-163)||(34909557-34909702)
chr5 (18-191)||(25868764-25868938)
chr5 (22-184)||(31913467-31913628)
chr5 (18-190)||(19222988-19223155)
chr5 (57-150)||(5651191-5651284)
chr5 (52-150)||(7125169-7125267)
chr5 (23-161)||(16497729-16497867)
chr5 (53-150)||(28623171-28623268)
chr5 (18-163)||(16800694-16800838)
chr5 (18-99)||(24258538-24258619)
chr5 (89-163)||(29964138-29964211)
chr5 (89-163)||(30010587-30010660)
chr5 (52-150)||(37798124-37798222)
chr5 (33-160)||(3032287-3032413)
chr5 (52-150)||(37014302-37014400)
chr5 (53-150)||(39852819-39852916)
chr5 (53-148)||(16548850-16548946)
chr5 (155-191)||(34909713-34909749)
chr5 (53-148)||(29758706-29758801)
chr5 (52-147)||(4549917-4550012)
chr5 (55-150)||(5949562-5949657)
[»] scaffold0246 (2 HSPs)
scaffold0246 (12-190)||(1326-1514)
scaffold0246 (18-188)||(25571-25735)
[»] scaffold0421 (1 HSPs)
scaffold0421 (86-191)||(1732-1846)
[»] scaffold0433 (1 HSPs)
scaffold0433 (12-110)||(349-447)
[»] scaffold1128 (1 HSPs)
scaffold1128 (52-150)||(908-1006)
[»] scaffold0543 (1 HSPs)
scaffold0543 (52-150)||(10972-11070)
[»] scaffold0383 (1 HSPs)
scaffold0383 (86-172)||(16664-16749)
[»] scaffold0152 (2 HSPs)
scaffold0152 (86-172)||(20900-20985)
scaffold0152 (86-172)||(28816-28901)
[»] scaffold0110 (1 HSPs)
scaffold0110 (52-162)||(39279-39389)
[»] scaffold0013 (1 HSPs)
scaffold0013 (93-150)||(89320-89377)
[»] scaffold1504 (1 HSPs)
scaffold1504 (52-159)||(1314-1421)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 20 - 191
Target Start/End: Complemental strand, 6487454 - 6487283
Alignment:
Q  20 tccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattg 119  Q
    |||||||||||||||||||| |||| ||| | |||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||||| |    
T  6487454 tccacaaatcgagtgttaacacgtaaacttgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcg 6487355  T
Q  120 aaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
     |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6487354 gaaagtttgacgagtttgaccgagtgaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 6487283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 40162749 - 40162926
Alignment:
Q  13 ccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggt 112  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |||||| |||| ||| |||| |||    
T  40162749 ccactgttccacaaatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgtaaattcggagataaactcggttttcggt 40162848  T
Q  113 gaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  40162849 gaaatcggaaagtttgacgagtttgaccgagttaacacgtg-taaactcggagtaaactagtccgagtttacctttgaa 40162926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 9972738 - 9972911
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||| |||||||||| | |||  |||||||| || |||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  9972738 gttccacaaatcgagtattaactcgtaaattcgctcgagtttatgtttttaggtggcaaaaacgtgtaaactcggaggtaaactcggtttttggtgaaat 9972837  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
     | ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  9972838 cggaaagtttgacgagtttgaccgagttaacacgtgttaaactcagaataaactcgtccgagtttacctttgaa 9972911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 51967243 - 51967387
Alignment:
Q  19 ttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaatt 118  Q
    ||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||| | |||||||||||||| ||| |||||||||||||     
T  51967243 ttccacaaatcgagtgttaacacgtaaactcgttcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatc 51967342  T
Q  119 gaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  51967343 gaaaagtttgacgagtttgaccgagttaacacgtgttaaattcgg 51967387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 26448596 - 26448741
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||||||| |||||  ||||||||| | |||||||||||||||| | |||||||||||||||| |  ||||||||||||||    
T  26448596 gttccacaaatcgagtgttaactcgtaaactcgctcgagtttacatttttaggtggcaaaaacatgtaaactcggaggtaaacttaatttttggtgaaat 26448695  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     | ||||||||||||||||||||||||||||||| |||||||||||    
T  26448696 cggaaagtttgacgagtttgaccgagttaacacgcgttaaactcgg 26448741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 29966520 - 29966362
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||| |||||||||            |||||||||||||    
T  29966520 gttccacaaatcgagtgttaactcgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgtaaactcgg------------tttttggtgaaat 29966433  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttga 190  Q
     |||||||| |||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||    
T  29966432 cgaaaagttcgacgagtttgaccgagttaacatgtgttaaactcg--gtaaactcgtccgagtttacctttga 29966362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 8563496 - 8563352
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||| ||| |||||  ||||||||||| ||||| || ||||||||| | ||||||||| |||| ||| |||||| ||||||    
T  8563496 gttccacaaatcgagtgttaacttgtaaactcgcacgagtttacgtttttagatgacaaaaacgtgttaactcggagataaactcggtttttgatgaaat 8563397  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 162  Q
     | ||||||||||||||||||||||||||||||||||||||||||    
T  8563396 cggaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 8563352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 40487796 - 40487632
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||| | |||||||||||||| ||| |||||||     |    
T  40487796 gttccacaaatcgagtgttaactcgtaaactc-tctgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttgg-----t 40487703  T
Q  118 tgaaaagtttgacgagtttgaccgagtt-aacacgtgttaaactcggagtaaactcgtccgagtttaccttt 188  Q
    ||||||||||||||||||||  || ||| ||| |||| ||||||||||||||||||||||||||||||||||    
T  40487702 tgaaaagtttgacgagtttgttcgtgttaaactcgtg-taaactcggagtaaactcgtccgagtttaccttt 40487632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 56424118 - 56423968
Alignment:
Q  13 ccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggt 112  Q
    |||| |||||||||| ||| ||||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||||||||||||| ||| ||||| ||    
T  56424118 ccactgttccacaaagcgaatgttaacacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttagt 56424019  T
Q  113 gaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    ||||| | ||||||||| |||||||||| |||||||| |||||||||||||    
T  56424018 gaaatcggaaagtttgatgagtttgaccaagttaacatgtgttaaactcgg 56423968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 46 - 191
Target Start/End: Original strand, 54561212 - 54561365
Alignment:
Q  46 actcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagtt 145  Q
    ||||| |||||||||| | |||||||||||||||| | |||||||||||||||| ||| ||||||||||||| | ||||||||||| |||||||||||||    
T  54561212 actcgcccgagtttacatttttaggtggcaaaaacatgtaaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgtgtttgaccgagtt 54561311  T
Q  146 aacacgtgttaaactcg--------gagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||        | |||||||||||||||||||||||||||    
T  54561312 aacacgtgttaaactcggtaaactcgtgtaaactcgtccgagtttacctttgaa 54561365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 21486480 - 21486615
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||| |||||||| ||||||| ||| ||||||| |||||    
T  21486480 gttccacaaatcgagtgttaactcgtaaactcgttcgagtttacgtttttaggtggcaaaaccgtgtaaactcgaaggtaaactcggtttttggagaaat 21486579  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtg 153  Q
       |||||||||||||||||||| || |||||||||    
T  21486580 cagaaagtttgacgagtttgacctaggtaacacgtg 21486615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 162
Target Start/End: Complemental strand, 23170841 - 23170725
Alignment:
Q  46 actcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagtt 145  Q
    ||||| || ||||||||| ||||||||||||||| || | || |||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||    
T  23170841 actcgcccaagtttacgtttttaggtggcaaaaatgtgttaattcggaggtaatttcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagtt 23170742  T
Q  146 aacacgtgttaaactcg 162  Q
    |||| ||||||||||||    
T  23170741 aacatgtgttaaactcg 23170725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 42937513 - 42937417
Alignment:
Q  54 gagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||||||||||  |||| ||| | |||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  42937513 gagtttacgtatttaggtgctaaaagcgttttaactcggaggtaaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacac 42937417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 29469162 - 29469260
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  29469162 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 29469260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 129
Target Start/End: Original strand, 25013406 - 25013522
Alignment:
Q  13 ccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggt 112  Q
    |||| |||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||| | | ||||||||| |||| || ||||||  |    
T  25013406 ccactgttccacaaatcgagtgttaacacgtaaactcgttcgagtttacgtttttaggtggcaaaaacatgttaactcggagctaaactcaatttttaat 25013505  T
Q  113 gaaattgaaaagtttga 129  Q
    ||||| | |||||||||    
T  25013506 gaaatcggaaagtttga 25013522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 3860328 - 3860230
Alignment:
Q  12 tccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttg 110  Q
    ||||| ||| |||||||||||||||||| |||| |||||| ||||||||||| |||| ||||||||||||| | |||||||||||||| ||| ||||||    
T  3860328 tccactgtttcacaaatcgagtgttaacacgtaaactcgttcgagtttacgtttttatgtggcaaaaacgtgttaactcggaggtaaactcggtttttg 3860230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 110
Target Start/End: Complemental strand, 3869085 - 3868987
Alignment:
Q  12 tccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttg 110  Q
    ||||| ||| |||||||||||||||||| |||| |||||| ||||||||||| |||| ||||||||||||| | |||||||||||||| ||| ||||||    
T  3869085 tccactgtttcacaaatcgagtgttaacacgtaaactcgttcgagtttacgtttttatgtggcaaaaacgtgttaactcggaggtaaactcggtttttg 3868987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 8084208 - 8084306
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| | || |||| | ||||||||||||||||||||||||||||||    
T  8084208 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagttaacac 8084306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 185
Target Start/End: Complemental strand, 24966624 - 24966491
Alignment:
Q  51 tccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||||| |||||||  ||||| ||| | |||||||| ||||||||| |||||||| |||| | || ||||| ||||||||||| |||||||||    
T  24966624 tccgagtttacgtgtttaggtaccaaaatcgtgttaactcggaagtaaattcggtttttggtaaaatgggaaggtttgccgagtttgaccaagttaacac 24966525  T
Q  151 gtgttaaactcggagtaaactcgtccgagtttacc 185  Q
     || ||||||| | ||||||||| |||||||||||    
T  24966524 ttggtaaactc-gtgtaaactcgaccgagtttacc 24966491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 21306443 - 21306298
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||  |||||||||||||| | |||||  ||||||| | | |||||| ||||||||| | ||||| || |||||| ||| |||| |||||||    
T  21306443 gttccacaaataaagtgttaactcgtaaattcgtcgtagtttacatttgtaggtgccaaaaacgtgttaactcagaagtaaatccgagttttagtgaaat 21306344  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
       |||||||||||| ||||  ||||||||||||||||||||||||    
T  21306343 cagaaagtttgacgaatttggtcgagttaacacgtgttaaactcgg 21306298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 50517191 - 50517324
Alignment:
Q  51 tccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||||| |||||||  ||||| ||| | ||||  |||||||| ||||||| |||| |||||| || |||||||||||||||||||||||||||    
T  50517191 tccgagtttacgtgtttaggtaccaaaatcgtgttaactttgaggtaaactcgatttctggtaaaattggaaggtttgacgagtttgaccgagttaacac 50517290  T
Q  151 gtgttaaactcggagtaaactcgtccgagtttacc 185  Q
      | ||||||| | ||||||||| |||| ||||||    
T  50517291 tcggtaaactc-gtgtaaactcgaccgattttacc 50517324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 58 - 163
Target Start/End: Complemental strand, 41470424 - 41470328
Alignment:
Q  58 ttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaa 157  Q
    |||||| |||||||||||||||||| | |||||||||||||| ||| ||||||||||||||| ||         ||||||||||||||||||||||||||    
T  41470424 ttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaattggaa---------agtttgaccgagttaacacgtgttaa 41470334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 23671473 - 23671383
Alignment:
Q  57 tttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaa 147  Q
    ||||||| |||||||  ||||| ||| | |||||||||||||| ||||||| ||||||||| |||||||||||||||||||| | ||||||    
T  23671473 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtgaaatcgaaaagtttgacgagtttgagcaagttaa 23671383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 26955301 - 26955464
Alignment:
Q  24 caaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgattttt------ggtgaaat 117  Q
    |||||||||||||||  |||| ||| | |||| ||||||| |||||||  ||||| ||| |||| ||  ||||||||||| |||||      ||| ||||    
T  26955301 caaatcgagtgttaaaacgtaaacttgcccgaatttacgtttttaggtttcaaaatcgtgtaaattcaaaggtaaattcgttttttttttttggtaaaat 26955400  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagttt 182  Q
     |||||||||| ||||||||||||||||||||||  ||||| ||||| ||||||||| |||||||    
T  26955401 cgaaaagtttgtcgagtttgaccgagttaacacggcttaaaatcgga-taaactcgttcgagttt 26955464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 871776 - 871905
Alignment:
Q  19 ttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaatt 118  Q
    ||||| |||||||||||||||||||  | |   |||||||||||| |||||||  ||||  ||| | |||||||||||||| ||||||| |||| ||||     
T  871776 ttccataaatcgagtgttaactcgtcgagtttaccgagtttacgtttttaggtaccaaat-cgtgtcaactcggaggtaaactcgatttctggtaaaatc 871874  T
Q  119 gaaaagtttgacgagtttgac-cgagttaac 148  Q
    | || |||||||||||||||| |||||||||    
T  871875 ggaatgtttgacgagtttgactcgagttaac 871905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 14334366 - 14334492
Alignment:
Q  25 aaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaag 124  Q
    ||||||||||||||  |||| ||| | |||||||||||| |||||||  ||||| ||  |||||||||| ||||| | | |||||||| |||| | ||||    
T  14334366 aaatcgagtgttaaaacgtaaacttgcccgagtttacgtttttaggtaccaaaatcgcgtaaactcggacgtaaacttgttttttggtaaaatcggaaag 14334465  T
Q  125 tttgacgagtttgaccgagttaacacg 151  Q
    ||   | ||||||||||||||||||||    
T  14334466 ttgacctagtttgaccgagttaacacg 14334492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 54341591 - 54341688
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| ||||||| |||||||| ||| ||| |||| ||||||||| |||| ||||||||||| ||||||||||    
T  54341591 cgagtttacatttttaggtacaaaaatcgtgtaaactctgaggtaaaatcggtttctggtaaaattgaaaggtttaacgagtttgactgagttaacac 54341688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 29855964 - 29856062
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||| ||   |||| ||| | ||||| |||||||| ||||||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  29855964 ccgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaattggaaggtttaacgagtttgactgagttaacac 29856062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 29510169 - 29510072
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| |||||||  ||||| ||| | ||||| || ||||| || |||| |||| ||||   || |||||||||||||||||||||||||||    
T  29510169 cgagtttacgtgtttaggtatcaaaatcgtgttaactctgatgtaaactcaatttctggtaaaatcagaaggtttgacgagtttgaccgagttaacac 29510072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 8563349 - 8563313
Alignment:
Q  155 taaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||||||||||||||| ||||||    
T  8563349 taaactcggagtaaactcgtccgagtttacttttgaa 8563313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 33138798 - 33138877
Alignment:
Q  51 tccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgac 130  Q
    ||||||||||||| |||||||  ||||| ||| | |||||||||||||| ||||||| |||| |||| | || |||||||    
T  33138798 tccgagtttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaaggtttgac 33138877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 41725564 - 41725659
Alignment:
Q  55 agtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| |||||||   |||| ||| | ||||| |||||||| ||||||| |||| |||| | || |||| ||||||||||| ||||||||||    
T  41725564 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttaacgagtttgactgagttaacac 41725659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 46286707 - 46286806
Alignment:
Q  51 tccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||||| |||||||  ||||| ||| | ||| |  ||||||| ||||||| | || || | | || |||||||||||||||||||||||||||    
T  46286707 tccgagtttacgtttttaggtaccaaaatcgtgttaacactaaggtaaactcgatttctagtaaactcggaaggtttgacgagtttgaccgagttaacac 46286806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 23987645 - 23987742
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||   |||| ||| | ||||| |||||||||| | ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  23987645 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaattgg-tttctggtaaaattggaaggtttaacgagtttgactgagttaacac 23987742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 49501286 - 49501188
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||| | || |||| ||||||||||| ||||||||||    
T  49501286 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtttgacggagttaacac 49501188  T

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Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 49507351 - 49507253
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||| | || |||| ||||||||||| ||||||||||    
T  49507351 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtttgacggagttaacac 49507253  T

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Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 5441851 - 5441948
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  5441851 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 5441948  T

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Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 160
Target Start/End: Complemental strand, 25843058 - 25842993
Alignment:
Q  95 gtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaact 160  Q
    ||||||||| ||| |||||||||   ||||||||| ||| |||||||||||||||  |||||||||    
T  25843058 gtaaattcggtttatggtgaaatcagaaagtttgaagagattgaccgagttaacatatgttaaact 25842993  T

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Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 28484343 - 28484442
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaa--cgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaaca 149  Q
    |||||||||||| |||||||  ||||||  ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| |||||||||    
T  28484343 ccgagtttacgtttttaggta-caaaaagtcgtgttaactctgaggtaaactcggtttctggtaaaattggaaggtttaacgagtttgactgagttaaca 28484441  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 26491225 - 26491117
Alignment:
Q  54 gagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtg 153  Q
    |||||||||| |||||||  ||||| ||| | || |  |||||||| ||| ||| |||| ||||   || ||||||||||||||||||||||||||  ||    
T  26491225 gagtttacgtgtttaggtaccaaaatcgtgttaaatttgaggtaaactcggtttctggtaaaatcagaaggtttgacgagtttgaccgagttaacatttg 26491126  T
Q  154 ttaaactcg 162  Q
     ||||||||    
T  26491125 gtaaactcg 26491117  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 27768513 - 27768609
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaaca 149  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| |||||||||    
T  27768513 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaaca 27768609  T

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Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 37828149 - 37828085
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  37828149 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 37828085  T

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Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 48261560 - 48261624
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  48261560 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 48261624  T

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Target: chr1 (Bit Score: 123; Significance: 2e-63; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 7798481 - 7798659
Alignment:
Q  13 ccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggt 112  Q
    |||| |||||||||||||||| ||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||||||||||||| ||| ||||||||    
T  7798481 ccactgttccacaaatcgagtattaacacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggt 7798580  T
Q  113 gaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    ||||| | |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  7798581 gaaatcggaaagtttgacgagtttgaccgagtgaacacgtgttaaactcagagtaaactcgtccgagtttacctttgaa 7798659  T

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Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 1108338 - 1108500
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||| ||||||||| |||||||| |||||||||||||||| ||| |||||||||||||    
T  1108338 gttccacaaatcgagtgttaactcgtaaattcgtctgagtttacgtttttaggtggtaaaaacgtgtaaactcggaggtaaactcggtttttggtgaaat 1108437  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagttt 182  Q
     | ||||||||||||||||||| |||||||| |||||||||||||   |||||||||| ||||||    
T  1108438 cggaaagtttgacgagtttgactgagttaacgcgtgttaaactcg--ataaactcgtctgagttt 1108500  T

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Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 34019109 - 34019250
Alignment:
Q  22 cacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaa 121  Q
    ||||||| ||||||||||||||| |||||||||||||||||| || |||||||||||| || | |||||||||||||||||||||||||||||||| | |    
T  34019109 cacaaattgagtgttaactcgtaaactcgtccgagtttacgttttaaggtggcaaaaatgtgttaactcggaggtaaattcgatttttggtgaaatcgga 34019208  T
Q  122 aagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    |||||||||||| |||||||||||||||||||||||| ||||    
T  34019209 aagtttgacgaggttgaccgagttaacacgtgttaaattcgg 34019250  T

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Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 34751707 - 34751562
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||| ||| ||||||||||| | ||| |||||||||||| ||||  |||||||||||| | |||||||||||||| ||| |||||||||||||    
T  34751707 gttccacaaattgagggttaactcgtaaattcgaccgagtttacgtttttaaatggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaat 34751608  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     | |||||||| | ||||||||||||||||||||||||||||||||    
T  34751607 cggaaagtttgccaagtttgaccgagttaacacgtgttaaactcgg 34751562  T

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Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 18954451 - 18954613
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||| | |||||||| ||||| ||| |||||||||||||    
T  18954451 gttccacaaatcgagtgttaactcgtaaattcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggacgtaaactcggtttttggtgaaat 18954550  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttga 190  Q
     | ||         |||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  18954551 cggaa---------agtttgaccgagttaacatgtgttaaactc-gtgtaaactcgtccgagtttacctttga 18954613  T

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Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 33886953 - 33886850
Alignment:
Q  60 acgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaac 159  Q
    |||| |||||||||||||||||| | |||||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  33886953 acgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacacgtgttaaac 33886854  T
Q  160 tcgg 163  Q
    ||||    
T  33886853 tcgg 33886850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 33957297 - 33957400
Alignment:
Q  60 acgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaac 159  Q
    |||| |||||||||||||||||| | |||||||||||||| ||| ||||||||||||| | |||||||||||||||||||||||| ||||||||||||||    
T  33957297 acgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacacgtgttaaac 33957396  T
Q  160 tcgg 163  Q
    ||||    
T  33957397 tcgg 33957400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 8147337 - 8147435
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||    
T  8147337 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaattgcaaagtttgacgagtttgaccgagttaacac 8147435  T

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Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 4005087 - 4005185
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  4005087 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 4005185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 11579200 - 11579103
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| ||||||||  |||||||| | |||||||||||||||| ||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  11579200 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaatttgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 11579103  T

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Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 1243404 - 1243309
Alignment:
Q  55 agtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  1243404 agtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 1243309  T

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Target: chr1; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 9192044 - 9192142
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| ||||   ||||||||||||||||||||||||||||||    
T  9192044 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcagaaagtttgacgagtttgaccgagttaacac 9192142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 41353441 - 41353539
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| || ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  41353441 ccgagtttatgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 41353539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 51106912 - 51107010
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||| ||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  51106912 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggaaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 51107010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 26757635 - 26757733
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||  | ||||| |||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  26757635 ccgagtttacgtgtttaggtgctaaaaacgagttaactcagaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 26757733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 47371675 - 47371547
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgt 152  Q
    |||||||||||| ||||||  ||||| ||| | |||||||||||||| ||||||| |||| |||| | || ||||| |||||||||||||||||||||      
T  47371675 cgagtttacgtacttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaaggtttgccgagtttgaccgagttaacactc 47371576  T
Q  153 gttaaactcggagtaaactcgtccgagttt 182  Q
    | ||||||| | ||||||||| ||||||||    
T  47371575 ggtaaactc-gtgtaaactcgaccgagttt 47371547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 29027978 - 29028030
Alignment:
Q  25 aaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaa 77  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  29027978 aaatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaa 29028030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 15834785 - 15834687
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||| | |||||||   |||| ||| | ||||| ||||||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  15834785 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcgatttttggtaaaattggaaggtttaacgagtttgactgagttaacac 15834687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 5209464 - 5209371
Alignment:
Q  57 tttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||| |||||||  ||||| ||| | ||||||||||| || ||||||| |||||||||   |||||||||||||||||| |||||||||||    
T  5209464 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtcaactcgatttctggtgaaatcagaaagtttgacgagtttgatcgagttaacac 5209371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 48966590 - 48966497
Alignment:
Q  54 gagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaa 147  Q
    |||||||||| |||||||  ||||| ||| | ||||| |||||||| | ||||| || |||||||| || ||||||||||||||||||||||||    
T  48966590 gagtttacgtgtttaggtaccaaaatcgtgttaactctgaggtaaacttgatttctgatgaaattggaaggtttgacgagtttgaccgagttaa 48966497  T

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Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 184
Target Start/End: Complemental strand, 42304564 - 42304470
Alignment:
Q  89 tcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttac 184  Q
    ||||||||||| ||| ||| |||| |||||| || |||| ||||||||||||||||||||||  | ||||||| | ||||||||| ||||||||||    
T  42304564 tcggaggtaaactcggtttctggtaaaattggaaggtttaacgagtttgaccgagttaacactaggtaaactc-gtgtaaactcgaccgagtttac 42304470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 21248611 - 21248490
Alignment:
Q  17 cgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaa 116  Q
    ||||||| || ||||||||||| ||||| ||||   | ||||||||| |||||||| ||||| ||| | |||| ||| ||||| | | |||||| |||||    
T  21248611 cgttccataagtcgagtgttaaatcgtagactcagactagtttacgtttttaggtgtcaaaatcgtgttaacttggaagtaaaatggttttttgttgaaa 21248512  T
Q  117 ttgaaaagtttgacgagtttga 138  Q
    ||| || |||||||||||||||    
T  21248511 ttggaatgtttgacgagtttga 21248490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Original strand, 34019261 - 34019296
Alignment:
Q  155 taaactcggagtaaactcgtccgagtttacctttga 190  Q
    ||||||||||||||||||||||||||||||||||||    
T  34019261 taaactcggagtaaactcgtccgagtttacctttga 34019296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 49971697 - 49971576
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagt-ttgacgagtttgac-cgagttaaca 149  Q
    |||||||||||| |||||||  ||||| ||| | |||||||||||||| ||| ||| |||| |||| |||| || |||||||||||||| |||||||||     
T  49971697 ccgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgttttctggtaaaatcgaaatgtgttgacgagtttgactcgagttaact 49971598  T
Q  150 cgtgttaaactcggagtaaactcg 173  Q
    || || |||||||| |||||||||    
T  49971597 cg-gtcaaactcgg-gtaaactcg 49971576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 33957411 - 33957444
Alignment:
Q  155 taaactcggagtaaactcgtccgagtttaccttt 188  Q
    ||||||||||||||||||||||||||||||||||    
T  33957411 taaactcggagtaaactcgtccgagtttaccttt 33957444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 48177192 - 48177095
Alignment:
Q  54 gagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttt-tggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||| ||||||| | |||| ||| | ||||| |||||||| ||| |||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  48177192 gagtttacgtttttaggtagaaaaatcgtgttaactctgaggtaaaatcggttttctggtaaaattggaaggtttaacgagtttgactgagttaacac 48177095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 148
Target Start/End: Original strand, 52182383 - 52182443
Alignment:
Q  89 tcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac-cgagttaac 148  Q
    ||||||||||||||||||| |||| |||| |||| |||||||||||| ||| |||||||||    
T  52182383 tcggaggtaaattcgatttctggtaaaatcgaaatgtttgacgagttcgactcgagttaac 52182443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 149
Target Start/End: Original strand, 15927353 - 15927416
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaaca 149  Q
    ||||| |||||||||||| ||| || | |||| | ||||||||||||||||||| |||||||||    
T  15927353 aactctgaggtaaattcggtttctgataaaatcggaaagtttgacgagtttgactgagttaaca 15927416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 5494849 - 5494751
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||  ||||| ||| | ||||| |||||||| ||| ||| |||| ||||   || |||||| ||||||||| ||||||||||    
T  5494849 ccgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcagaaggtttgatgagtttgactgagttaacac 5494751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 184
Target Start/End: Complemental strand, 28404045 - 28403916
Alignment:
Q  54 gagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtg 153  Q
    |||||||| | |||||||  ||||| ||| | |||| | ||||||||||| ||| |  | |||| |||| ||||||||| |||||||||||||||||  |    
T  28404045 gagtttacatttttaggtaccaaaatcgtgttaacttgaaggtaaattcggtttctaataaaatcgaaatgtttgacgaatttgaccgagttaacactcg 28403946  T
Q  154 ttaaactcggagtaaactcgtccgagtttac 184  Q
     |||||||   ||||||||| ||||||||||    
T  28403945 gtaaactc-atgtaaactcgaccgagtttac 28403916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 6313024 - 6313121
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  6313024 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 6313121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 8140983 - 8140886
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| |||||||   |||| ||| | ||||| |||||||| ||||||| |||| |||||  || |||| | ||||||||| ||||||||||    
T  8140983 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttctggtaaaattagaaggtttaatgagtttgactgagttaacac 8140886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 25612540 - 25612637
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  25612540 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 25612637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 29396184 - 29396087
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  29396184 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 29396087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 45273015 - 45273112
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| |||||||   ||||  || | ||||| |||||||| ||| ||| |||| |||| | || |||||||||||||||| ||||||||||    
T  45273015 cgagtttacgtttttaggtacaaaaattgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttgacgagtttgactgagttaacac 45273112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 49237066 - 49236974
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagtt 145  Q
    |||||||| || |||||||  ||||| ||| | || |||||| |||  ||| ||| |||| |||| |||| ||||||||||||||||||||||    
T  49237066 cgagtttatgtgtttaggtaccaaaaccgtgttaattcggagttaagctcggtttctggtaaaatcgaaaggtttgacgagtttgaccgagtt 49236974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 51702076 - 51702140
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| ||||| ||| |||| ||||||||||| ||||||||||    
T  51702076 aactctgaggtaaaatcggtttctggtaaaattaaaaggtttaacgagtttgactgagttaacac 51702140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 35313522 - 35313695
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||| ||||| |||||||| ||| | |||||||||||||||||| |||||||||||||    
T  35313522 gttccacaaatcgagtgttaacacgtaaactcgcccgagtttacgtttttagatggcaaaaccgtgttaactcggaggtaaattcggtttttggtgaaat 35313621  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
     | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35313622 cggaaagtttgatgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtctgagtttacctttgaa 35313695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 34656553 - 34656715
Alignment:
Q  1 agtgtattatgtccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaat 100  Q
    |||||||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||| ||||||||| |||||||| |||| ||||| ||||||    
T  34656553 agtgtattatgtccgccgtttcacaaatcgagtgttaactcgtgtactcgtccgagtttacgtttttaggtggtaaaaacgtgtaaattcggaagtaaat 34656652  T
Q  101 tcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34656653 tcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 34656715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 191
Target Start/End: Original strand, 21024035 - 21024203
Alignment:
Q  22 cacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaa 121  Q
    |||||||||||||||||| |||| | ||| |||||||||||  |||||||| ||||||||| | |||||| ||||||| ||| ||||||||||||| | |    
T  21024035 cacaaatcgagtgttaacacgtaaattcgcccgagtttacgattttaggtgacaaaaacgtgttaactcgaaggtaaactcggtttttggtgaaatcgga 21024134  T
Q  122 aagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||    
T  21024135 aagtttgacgagtttgaccgagttaacacgtgttaaactc-gtgtaaacttgtccgagtttacctttgaa 21024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 38910446 - 38910619
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||| ||||||||||||||   ||  |||| ||||||| ||||| |||||| ||||| |||||||| ||||||  ||| |||||||||||||    
T  38910446 gttccacaaatcaagtgttaactcgtaagttcacccgaatttacgtttttagatggcaagaacgtgtaaactcgaaggtaagctcggtttttggtgaaat 38910545  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
     | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38910546 cggaaagtttgacgagattgaccgagttaacacgtgttaaactcggagtaaactcgttcgagtttacctttgaa 38910619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 14732435 - 14732285
Alignment:
Q  13 ccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggt 112  Q
    |||| |||||||||||||||||||||| |||| |||||  | ||||||||| |||||||||||||||||| | |||||||||||||| | | ||||||||    
T  14732435 ccactgttccacaaatcgagtgttaacacgtaaactcgctcaagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaacttggtttttggt 14732336  T
Q  113 gaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    ||||| | |||||||||||||||||||||||| ||||||||||||||||||    
T  14732335 gaaatcggaaagtttgacgagtttgaccgagtgaacacgtgttaaactcgg 14732285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 19594176 - 19594320
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||| ||||| |||||||| ||| |||||| |||| |||| ||| |||||||||||||    
T  19594176 gttccacaaatcgagttttaactcgtaaactcgcccgagtttacgtttttagatggcaaaa-cgtgtaaactaggagataaactcggtttttggtgaaat 19594274  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     | |||||||||||||||||||||||||||||||||||||||||||    
T  19594275 cggaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 19594320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 37392751 - 37392597
Alignment:
Q  26 aatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagt 125  Q
    ||||||||||||||||||| | |||||||||||||||| |||||||||||||||| | ||||||||||| |||| | |||||||||||||||   ||       
T  37392751 aatcgagtgttaactcgtaaattcgtccgagtttacgtttttaggtggcaaaaacatgtaaactcggagataaacttgatttttggtgaaatcagaa--- 37392655  T
Q  126 ttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
          ||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  37392654 ------agtttgatcgagttaacacgtgttaaactcg--gtaaactcgtccgagtttacctttgaa 37392597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 1254592 - 1254461
Alignment:
Q  29 cgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttg 128  Q
    |||| ||||||||||| ||||| | |||||||||  |||||||| ||||||  | | || ||| ||||||| ||||||||||||||||| | |  |||||    
T  1254592 cgagagttaactcgtaaactcgcctgagtttacgattttaggtgtcaaaaattttttaaatcgaaggtaaactcgatttttggtgaaatcggactgtttg 1254493  T
Q  129 acgagtttgaccgagttaacacgtgttaaact 160  Q
    | ||||||||||||||||||||||||||||||    
T  1254492 atgagtttgaccgagttaacacgtgttaaact 1254461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 14741425 - 14741523
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| | || |||| | ||||||||||||||||||||||||||||||    
T  14741425 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagttaacac 14741523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 6268513 - 6268606
Alignment:
Q  65 tttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaa 158  Q
    |||||||| ||||||||| | |||||||| ||||| | | ||||||||||||||  || |||||||||||||||||||||||||||||||||||    
T  6268513 tttaggtgtcaaaaacgtgttaactcggatgtaaactaggtttttggtgaaattagaatgtttgacgagtttgaccgagttaacacgtgttaaa 6268606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 4639975 - 4639877
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| || |||| |||| |||| | ||| ||||||||||||||||||||||||||    
T  4639975 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactctatttctggtaaaatcggaaattttgacgagtttgaccgagttaacac 4639877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 14732264 - 14732228
Alignment:
Q  155 taaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||||||||||||||||||||||    
T  14732264 taaactcggagtaaactcgtccgagtttacctttgaa 14732228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 48136987 - 48136889
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||  ||||| ||| | ||||| |||||||| ||  ||| |||| |||||  || |||||||||||||||| ||||||||||    
T  48136987 ccgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcagtttctggtaaaattagaaggtttgacgagtttgactgagttaacac 48136889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 29614553 - 29614456
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| ||||||||| |||| ||||||||||| ||||||||||    
T  29614553 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattgaaaggtttaacgagtttgactgagttaacac 29614456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 23017025 - 23017089
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||| ||||||||| ||||||| | || |||||| ||  ||||||||||||||||||||||||||    
T  23017025 aacttggaggtaaactcgatttctcgtaaaattggaagatttgacgagtttgaccgagttaacac 23017089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 47067190 - 47067254
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| ||| |||| ||||||| |||| ||||||||| |||| ||||||||||| ||||||||||    
T  47067190 aactctgagataaaatcgatttctggtaaaattgaaaggtttaacgagtttgactgagttaacac 47067254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 11735289 - 11735194
Alignment:
Q  54 gagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac-cgagttaac 148  Q
    |||||||||  |||||||  ||||| ||| | |||||||||||||| ||||||| |||| |||| | || ||||| |||||||||| |||||||||    
T  11735289 gagtttacgattttaggtcccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaatgtttgccgagtttgactcgagttaac 11735194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 12740816 - 12740903
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac 139  Q
    |||||||||||| |||||||  ||||| ||| | ||||| |||||||| ||| | | |||| |||||| || ||||||||||||||||    
T  12740816 ccgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtgtctggtaaaattggaaggtttgacgagtttgac 12740903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 26201925 - 26201794
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||| |   | |   |||| ||||| | |||||||  ||||| ||| |||||||||||||||| || ||| ||| | ||||    
T  26201925 gttccacaaatcgagtgttaacttgccgagtttaccgaatttacatttttaggtaccaaaatcgtgtaaactcggaggtaaactcaattattgctaaaat 26201826  T
Q  118 tgaaaagtttgacgagtttgac-cgagttaac 148  Q
     | || |||||||||||||||| |||||||||    
T  26201825 cggaatgtttgacgagtttgactcgagttaac 26201794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 139
Target Start/End: Complemental strand, 33497193 - 33497107
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac 139  Q
    ||||||||| | |||| ||  ||||| ||| | |||||||||||||| ||||||| || | |||||| || ||||||||||||||||    
T  33497193 cgagtttacatttttaagtatcaaaatcgtgtcaactcggaggtaaactcgatttctgataaaattggaatgtttgacgagtttgac 33497107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 40460473 - 40460375
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||  |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  40460473 ccgagtttacgcttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 40460375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 510093 - 510190
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  510093 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 510190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 161
Target Start/End: Complemental strand, 28034607 - 28034498
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacg 151  Q
    |||||||||||| |||| ||   |||| ||| | ||||| || ||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||     
T  28034607 ccgagtttacgtttttatgtacaaaaatcgtgttaactctgatgtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacact 28034508  T
Q  152 tgttaaactc 161  Q
    || |||||||    
T  28034507 tggtaaactc 28034498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 28342758 - 28342855
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  28342758 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 28342855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 37915996 - 37915919
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgac 130  Q
    ||||||||||| ||||||||  |||| ||| | ||||| |||||||| ||||||| |||| |||| ||| ||||||||    
T  37915996 cgagtttacgtgtttaggtgctaaaagcgttttaactcagaggtaaactcgatttatggtaaaatcgaacagtttgac 37915919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 39784554 - 39784651
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  39784554 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgacagagttaacac 39784651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 44256513 - 44256416
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| ||||| |   |||| ||| | ||||| |||||||| ||||||| |||| |||| | || |||| ||||||||||| ||||||||||    
T  44256513 cgagtttacgtttttagatacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttaacgagtttgactgagttaacac 44256416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 19594331 - 19594367
Alignment:
Q  155 taaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  19594331 taaactcggagtaaacttgtccgagtttacttttgaa 19594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 29893452 - 29893516
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||  ||| ||||||||| |||| |||| ||||||||||| ||||||||||    
T  29893452 aactctgaggtaaactcagtttctggtgaaatcgaaaggtttaacgagtttgactgagttaacac 29893516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 8779712 - 8779545
Alignment:
Q  22 cacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaa 121  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| | |||||||||||||| ||| ||||||||||||| | |    
T  8779712 cacaaatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcgga 8779613  T
Q  122 aagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    ||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  8779612 aagtttgacgagtttgaccaagttaactcgtgttaaactcg--gtaaactcgtccgagtttacctttgaa 8779545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 31996379 - 31996238
Alignment:
Q  22 cacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaa 121  Q
    |||||||||||||||||| || | |||||  ||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||||| | |    
T  31996379 cacaaatcgagtgttaacacgcaaactcgctcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcgga 31996280  T
Q  122 aagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31996279 aagtttgacgagtttgaccgagttaacacgtgttaaactcgg 31996238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 21199519 - 21199664
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||||||| ||| | |  ||||||||| |||||||||||||| ||| | |||||  ||||||| |||||||||||||||||    
T  21199519 gttccacaaatcgagtgttaactcgtaaacttgccaaagtttacgtttttaggtggcaaaaccgtgttaactccaaggtaaactcgatttttggtgaaat 21199618  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     | ||||||||||||||||||||||||||||| |||||||||||||    
T  21199619 cggaaagtttgacgagtttgaccgagttaacatgtgttaaactcgg 21199664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 7835499 - 7835363
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| | || ||||||||||| ||| |||||||||||||    
T  7835499 gttccacaaatcgagtgttaacacgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgttaagtcggaggtaaactcggtttttggtgaaat 7835400  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     | ||         ||||||||||||||||||||||||||||||||    
T  7835399 cggaa---------agtttgaccgagttaacacgtgttaaactcgg 7835363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 12028941 - 12029105
Alignment:
Q  19 ttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaatt 118  Q
    ||||||||||||||||||||||| || ||| ||  || |||| || |||||| | ||||||||| | ||||  |||||||| |||||||||  ||||||     
T  12028941 ttccacaaatcgagtgttaactcataaacttgtttgactttatgtttttaggggtcaaaaacgtgttaactttgaggtaaactcgatttttattgaaatc 12029040  T
Q  119 gaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttac 184  Q
    |||| ||||||||||||||||  ||||||||||| |||||||| | ||||||||| ||||||||||    
T  12029041 gaaatgtttgacgagtttgacatagttaacacgtattaaactc-gtgtaaactcgaccgagtttac 12029105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 1463772 - 1463674
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  1463772 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 1463674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 6788099 - 6788197
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  6788099 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 6788197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 10113881 - 10113788
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagtt 145  Q
    |||||||||||| |||||||   |||||||| | |||||||||||||| ||| |||||||| |||| | |||||||||||||||||||||||||    
T  10113881 ccgagtttacgtgtttaggtcctaaaaacgtgttaactcggaggtaaactcgttttttggtaaaatcggaaagtttgacgagtttgaccgagtt 10113788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 21011012 - 21010868
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||| ||||||| |||||||| ||| ||||||  |||||| | | ||||||||  ||| |||| | || ||| |||| || ||| |||||||||||||    
T  21011012 gttccataaatcgaatgttaactagtaaactcgtttgagtttgcatttttaggtgttaaatacgtgttaattcgaaggtcaactcggtttttggtgaaat 21010913  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 162  Q
      ||| ||||||||||||| |||||||||| |||||| |||||||    
T  21010912 caaaatgtttgacgagtttaaccgagttaatacgtgtaaaactcg 21010868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 3000244 - 3000337
Alignment:
Q  57 tttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||| |||||||  ||||| ||| | ||||||| |||||||||||||| |||| |||| |  ||||||||||||||||| |||||||||||    
T  3000244 tttacgtgtttaggtaccaaaatcgtgttaactcgggggtaaattcgatttatggtaaaatcgggaagtttgacgagtttgatcgagttaacac 3000337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 7835352 - 7835316
Alignment:
Q  155 taaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||||||||||||||||||||||    
T  7835352 taaactcggagtaaactcgtccgagtttacctttgaa 7835316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 31975751 - 31975658
Alignment:
Q  54 gagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaa 147  Q
    ||||||| || |||||||  ||||| ||| | ||||| |||||||| ||||||| | || |||| | || ||||||||||||||||||||||||    
T  31975751 gagtttatgtgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttcttgtaaaatcggaaggtttgacgagtttgaccgagttaa 31975658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 2606896 - 2606992
Alignment:
Q  54 gagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||| ||||||   ||||| ||| | ||||| |||||||| ||||||| |||| ||||   || |||||| ||||||||||||||||||||    
T  2606896 gagtttacgtgtttaggcaccaaaatcgttttaactctgaggtaaactcgatttctggtaaaatcagaaggtttgatgagtttgaccgagttaacac 2606992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 14262156 - 14262092
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||||||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  14262156 aactctgaggtaaaatcgatttctggtaaaattggaaggtttaacgagtttgactgagttaacac 14262092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 31535160 - 31535068
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagtt 145  Q
    ||||||||| | |||||||  |||||  || | ||||| |||| ||| ||||||| |||| |||| |||| ||||||||||||||||||||||    
T  31535160 cgagtttacatttttaggtatcaaaattgtgttaactctgaggcaaactcgatttctggtaaaatcgaaaggtttgacgagtttgaccgagtt 31535068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 24194465 - 24194511
Alignment:
Q  105 tttttggtgaaattgaaaagtttgacgagt-ttgaccgagttaacac 150  Q
    |||||||| |||||| |||||||||||||| ||||||||||||||||    
T  24194465 tttttggtaaaattggaaagtttgacgagtattgaccgagttaacac 24194511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 13461374 - 13461459
Alignment:
Q  54 gagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac 139  Q
    |||||||||| |||| ||  ||||| ||| | |||||||||||||| ||| |||||||| ||||   || ||||||||||||||||    
T  13461374 gagtttacgtttttatgtatcaaaatcgtgtcaactcggaggtaaactcggtttttggtaaaatcagaatgtttgacgagtttgac 13461459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 31067880 - 31067977
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  31067880 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 31067977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 4200171 - 4200107
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  4200171 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 4200107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 15381641 - 15381513
Alignment:
Q  24 caaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcg-gaggtaaattcgatttttggtgaaattgaaa 122  Q
    |||||||||||||||  |||| |||||  | ||||||||| |||||||| ||||  |||||||| | | |||||||| ||| |||||| | |||||| ||    
T  15381641 caaatcgagtgttaaaacgtaaactcgatcaagtttacgtttttaggtgtcaaagtcgtataaatttgagaggtaaactcgttttttgataaaattggaa 15381542  T
Q  123 agtttgacgagtttgaccgagttaacacg 151  Q
    ||||   ||||||| ||||| ||| ||||    
T  15381541 agttgatcgagtttaaccgaattagcacg 15381513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 31896118 - 31896182
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  31896118 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 31896182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 38413590 - 38413409
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  38413590 gttccataaatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgtaaactcggaggtaaactcggtttttggtgaaat 38413491  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcg--------gagtaaactcgtccgagtttacctttgaa 191  Q
     | ||||||||||||||||||||||||||||||||||||||||||        | |||||||||||||||||||||||||||    
T  38413490 cggaaagtttgacgagtttgaccgagttaacacgtgttaaactcgataaactcgtgtaaactcgtccgagtttacctttgaa 38413409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 13898442 - 13898586
Alignment:
Q  19 ttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaatt 118  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||| | |||||||||||||| |||||||||||||||||     
T  13898442 ttccacaaatcgagtgttaacacgtaaactcgtctgagtttacgtttttaggcggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatc 13898541  T
Q  119 gaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  13898542 ggaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 13898586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 14039059 - 14039203
Alignment:
Q  19 ttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaatt 118  Q
    ||||||||||||||||||||| |||| ||||||| |||||||||| |||||| ||||||||||| | |||||||||||||| |||||||||||||||||     
T  14039059 ttccacaaatcgagtgttaacacgtaaactcgtctgagtttacgtttttaggcggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatc 14039158  T
Q  119 gaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    | |||||||||||||||||||||||||||||||||||||||||||    
T  14039159 ggaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 14039203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 3991766 - 3991883
Alignment:
Q  46 actcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagtt 145  Q
    |||||| ||||||||||| |||||||||||||||||| | |||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||    
T  3991766 actcgttcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagtt 3991865  T
Q  146 aacacgtgttaaactcgg 163  Q
    ||||||||||||||||||    
T  3991866 aacacgtgttaaactcgg 3991883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 163
Target Start/End: Original strand, 19948507 - 19948648
Alignment:
Q  22 cacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaa 121  Q
    ||||||||||||||||||  ||| ||||| |||||||||| | |||||||||||||||||| | |||||||||||||| ||  ||||||||||||| | |    
T  19948507 cacaaatcgagtgttaacatgtaaactcgcccgagtttacatttttaggtggcaaaaacgtgttaactcggaggtaaactcagtttttggtgaaatcgga 19948606  T
Q  122 aagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  19948607 aagtttgacgagtttgaccgagttaacacgtgttaaactcgg 19948648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 33262818 - 33262963
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||| ||||  ||| |||||||||| |||||| ||||||||||| |||||||||||||||||| |||||||| ||||||| ||| |||||||||||||    
T  33262818 gttccataaattaagtattaactcgtaaactcgttcgagtttacgtttttaggtggcaaaaacgtgtaaactcgaaggtaaactcggtttttggtgaaat 33262917  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     | ||||||||||||||||||| ||||||||||||| |||||||||    
T  33262918 cggaaagtttgacgagtttgactgagttaacacgtggtaaactcgg 33262963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 45161203 - 45161096
Alignment:
Q  84 taaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagttta 183  Q
    |||||||||||||||| ||| ||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  45161203 taaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagttcgaccgagttaacacgtgttaaactcagagtaaactcgtccgagttta 45161104  T
Q  184 cctttgaa 191  Q
    ||||||||    
T  45161103 cctttgaa 45161096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 41978803 - 41978956
Alignment:
Q  19 ttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaatt 118  Q
    |||||||||| ||||||||||||||| ||||  |||  ||||||| |||||||||||||||| | | || ||||||||||| ||| |||||| ||||||     
T  41978803 ttccacaaattgagtgttaactcgtaaactcacccggctttacgtttttaggtggcaaaaacatgttaattcggaggtaaactcggtttttgatgaaatc 41978902  T
Q  119 gaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgt 174  Q
    | |||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  41978903 ggaaagtttgacgagtttgaccgagttaacacgtgttaaactc--agtaaactcgt 41978956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 12877652 - 12877763
Alignment:
Q  19 ttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaatt 118  Q
    ||||| |||||||||||||||||||| | |||||||||||||||| |||||||||||||||||| | |||||||||||||| ||| |||||| ||||||     
T  12877652 ttccataaatcgagtgttaactcgtaaattcgtccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttgatgaaatc 12877751  T
Q  119 gaaaagtttgac 130  Q
    | ||||||||||    
T  12877752 ggaaagtttgac 12877763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 11153486 - 11153342
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||| ||||||||||||||| |||||  ||| ||||||| ||||||||   ||| ||| | |||||||||||||| ||| ||| |||| ||||    
T  11153486 gttccacaaattgagtgttaactcgtaaactcggacgaatttacgtttttaggtgctgaaatcgtgttaactcggaggtaaactcggtttctggtaaaat 11153387  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 162  Q
     || | ||||| |||||||||||||||||||||||||||||||||    
T  11153386 cgagatgtttggcgagtttgaccgagttaacacgtgttaaactcg 11153342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 18900030 - 18899932
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| | || |||| | ||||||||||||||||||||||||||||||    
T  18900030 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagttaacac 18899932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 57 - 150
Target Start/End: Original strand, 15224234 - 15224327
Alignment:
Q  57 tttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||| |||||||  ||||| ||| | ||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| |||||||    
T  15224234 tttacgtgtttaggtaccaaaatcgtgttaactcagaggtaaactcgatttctggtgaaatcgaaaagtttgacgagtttgaccgaattaacac 15224327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 43318885 - 43318752
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||| |||| |||  |||||||| | |||||             ||||||||| ||||    
T  43318885 gttccacaaatcgagtgttaactcgttaactcgttcgagtttacgtttttatgtgctaaaaacgtgttaactct------------atttttggtaaaat 43318798  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     | ||||||||||||||||||||||||||||| |||||||||||||    
T  43318797 cggaaagtttgacgagtttgaccgagttaacatgtgttaaactcgg 43318752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 30850271 - 30850365
Alignment:
Q  56 gtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacg 151  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||| |||||||| ||||   |||| |||||  |||||||||||||||||||    
T  30850271 gtttacgtttttaggtgccaaaatcgtataaactcggaggtaaattcgttttttggtaaaatcataaag-ttgaccggtttgaccgagttaacacg 30850365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 35404420 - 35404323
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| |||||||  | ||| ||| | ||||  |||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||    
T  35404420 cgagtttacgtttttaggtaccgaaatcgtgttaacttagaggtaaactcggtttttggtaaaattggaaagtttgacgagtttgaccgagttaacac 35404323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 37810979 - 37810876
Alignment:
Q  58 ttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaa 157  Q
    |||||| ||||| || ||||||||| | || ||||||||||| | |||||||||||||||   || |||||| ||||||||||||  |||||||||||||    
T  37810979 ttacgtttttagatgccaaaaacgtgttaaatcggaggtaaacttgatttttggtgaaatcataatgtttgatgagtttgaccgatctaacacgtgttaa 37810880  T
Q  158 actc 161  Q
    ||||    
T  37810879 actc 37810876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 10657878 - 10657976
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||   |||| ||| | ||||| |||||||| |||||||||||| |||||| || |||| |||||||| || ||||||||||    
T  10657878 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttttggtaaaattggaaggtttaacgagtttaactgagttaacac 10657976  T

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Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 40829635 - 40829733
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||| ||| | |||||||  ||||| ||| | |||||||||||||| ||| ||| |||| |||| |||| ||||||||| |||||||||||||||||    
T  40829635 ccgagtctacatttttaggtatcaaaatcgtgttaactcggaggtaaactcggtttctggtaaaatagaaaggtttgacgaatttgaccgagttaacac 40829733  T

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Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 2308811 - 2308718
Alignment:
Q  57 tttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||| |||| ||  ||||| ||| | |||||||||||||||||| ||| |||| ||||  ||||||||||| ||||||||| |||||||||    
T  2308811 tttacgtttttatgtaccaaaatcgtgttaactcggaggtaaattcggtttgtggtaaaatcaaaaagtttgacaagtttgaccaagttaacac 2308718  T

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Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 24025860 - 24025957
Alignment:
Q  65 tttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 162  Q
    |||||||| ||||||||| | |||| |||| |||| ||| |||||||| ||||   || ||||||||| || ||| ||||||||||||||||||||||    
T  24025860 tttaggtgtcaaaaacgtgttaacttggagataaactcggtttttggtaaaatcagaatgtttgacgaattggactgagttaacacgtgttaaactcg 24025957  T

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Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 182
Target Start/End: Complemental strand, 18727715 - 18727620
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagttt 182  Q
    |||||||||||||| |||| || |||| ||||  ||||||||||||||||| ||||||||||||   | ||||||| | ||||||||| ||||||||    
T  18727715 aactcggaggtaaactcgaattctggtaaaatcaaaaagtttgacgagtttcaccgagttaacattcgataaactc-gtgtaaactcgaccgagttt 18727620  T

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Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 33262974 - 33263010
Alignment:
Q  155 taaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||||||||||||||||||||||    
T  33262974 taaactcggagtaaactcgtccgagtttacctttgaa 33263010  T

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Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 7027352 - 7027449
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| ||||||||| |||| ||||||||||| ||||||||||    
T  7027352 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattgaaaggtttaacgagtttgactgagttaacac 7027449  T

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Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 18177720 - 18177817
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| ||||||| ||||||||||| ||||||||||    
T  18177720 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaagtttaacgagtttgacagagttaacac 18177817  T

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Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 15926378 - 15926474
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac-cgagttaac 148  Q
    ||||||||||| ||| |||  ||||| ||| | ||||||||||| || ||||||| |||| |||| | || |||||||||||||||| |||||||||    
T  15926378 cgagtttacgttttttggtaccaaaatcgtgtcaactcggaggttaactcgatttctggtaaaatcgcaatgtttgacgagtttgactcgagttaac 15926474  T

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Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 26789267 - 26789343
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 162  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| |||||||||| || ||||||||    
T  26789267 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacacttgataaactcg 26789343  T

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Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 28545802 - 28545854
Alignment:
Q  109 tggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactc 161  Q
    ||||||||| |||||||||||||| ||| || || ||||||||||||||||||    
T  28545802 tggtgaaatagaaaagtttgacgaatttaactgatttaacacgtgttaaactc 28545854  T

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Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 28740048 - 28739950
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| || |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  28740048 ccgagtttatgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 28739950  T

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Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 28545725 - 28545795
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactc 90  Q
    ||||||||||||||||  ||||||||| | ||||| |||||||| | |||| ||| ||||||||| |||||||    
T  28545725 gttccacaaatcgagt--taactcgtaaattcgtctgagtttacttttttacgtgccaaaaacgtgtaaactc 28545795  T

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Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 163
Target Start/End: Complemental strand, 34138097 - 34138068
Alignment:
Q  134 tttgaccgagttaacacgtgttaaactcgg 163  Q
    ||||||||||||||||||||||||||||||    
T  34138097 tttgaccgagttaacacgtgttaaactcgg 34138068  T

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Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 3575323 - 3575387
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  3575323 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 3575387  T

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Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 13898605 - 13898633
Alignment:
Q  163 gagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||||||||||||||    
T  13898605 gagtaaactcgtccgagtttacctttgaa 13898633  T

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Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 191
Target Start/End: Original strand, 14039222 - 14039250
Alignment:
Q  163 gagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||||||||||||||    
T  14039222 gagtaaactcgtccgagtttacctttgaa 14039250  T

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Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 43825322 - 43825386
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  43825322 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 43825386  T

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Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 28317212 - 28317025
Alignment:
Q  13 ccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggt 112  Q
    |||| |||| |||||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||| ||  ||||||||||||||| ||||||||||||    
T  28317212 ccactgttctacaaatcgagtgttaattcgtaaactcgtccgaatttacgtttttaggtggcaaaaaggtgaaaactcggaggtaaactcgatttttggt 28317113  T
Q  113 gaaattgaaaagtttgacgagtttgaccgagttaacacgtgt---------taaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    ||||| ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||    
T  28317112 gaaatcgaaaagtttgacgagtttgaccgagttaacacgtgtaaacccctgtaaactcggagtaaactcgtccgagtttacctttgaa 28317025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 41252131 - 41252311
Alignment:
Q  20 tccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattg 119  Q
    |||||||||||||||||| || ||| | |||| ||||||||| | |||||||||||||||||| | |||||||| ||||| |||||||||| |||||| |    
T  41252131 tccacaaatcgagtgttagcttgtaaattcgttcgagtttacttttttaggtggcaaaaacgtgttaactcggaagtaaactcgatttttgatgaaatcg 41252230  T
Q  120 aaaagtttgacgagtttgaccgagttaacacgtgttaaac---------tcggagtaaactcgtccgagtttacctttgaa 191  Q
     |||||||||||||||| ||||||| ||||||||||||||         |||||||||| |||||||||||||||||||||    
T  41252231 gaaagtttgacgagtttaaccgagtcaacacgtgttaaacttgataaagtcggagtaaattcgtccgagtttacctttgaa 41252311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 33177983 - 33177838
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||| ||||||||||||||| |||||  ||| |||| || |||||||  |||||| || | || | | ||||||| |||||||||||||||||    
T  33177983 gttccacaaattgagtgttaactcgtaaactcgcacgattttatgtttttaggtaccaaaaatgtgttaatttgaaggtaaactcgatttttggtgaaat 33177884  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    ||||| |||||||||||||||| |||||||||||||||||||||||    
T  33177883 tgaaatgtttgacgagtttgactgagttaacacgtgttaaactcgg 33177838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 1528040 - 1527901
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||| ||||| | | |||| | ||||||| |||| ||||||||||||| | |||||||||||||| |||||||||||||||||    
T  1528040 gttccacaaatcgagtgttaaatcgtaaatttgtccaattttacgtttttaagtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaat 1527941  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaa 157  Q
     | || ||| ||| |||||| |  ||||||||| ||||||    
T  1527940 cggaatgttggacaagtttggctaagttaacacatgttaa 1527901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 19484214 - 19484312
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| || ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  19484214 ccgagtttatgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 19484312  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 4871243 - 4871091
Alignment:
Q  20 tccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattg 119  Q
    |||||||||| |||||||||| |||  ||||||||| |||| || || |||||  ||| |||| | || || |||||||| |||||||||  | |||||     
T  4871243 tccacaaatcaagtgttaacttgtaggctcgtccgaatttatgttttcaggtgctaaatacgtgttaattcagaggtaaactcgattttttataaaatta 4871144  T
Q  120 aaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactc 172  Q
      | ||||||||||||| |||||||||||| ||||||||||||| ||||||||    
T  4871143 gtatgtttgacgagtttaaccgagttaacatgtgttaaactcggtgtaaactc 4871091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 8029941 - 8029811
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgt 152  Q
    ||||||||||| |||||||  ||||| ||| | ||||| ||| |||| ||||||| |||| |||| | || |||||||||||||||||||||||||||      
T  8029941 cgagtttacgtgtttaggtaccaaaatcgtgttaactctgagataaactcgatttctggtaaaatcggaaggtttgacgagtttgaccgagttaacactc 8029842  T
Q  153 gttaaactcggagtaaactcgtccgagtttac 184  Q
    | |||| || | ||||||||| ||||||||||    
T  8029841 ggtaaaatc-gtgtaaactcgaccgagtttac 8029811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 12522478 - 12522425
Alignment:
Q  109 tggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 162  Q
    |||| ||||||||| ||||||||||||||||||||||||||| || ||||||||    
T  12522478 tggtaaaattgaaaggtttgacgagtttgaccgagttaacacttggtaaactcg 12522425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 9288247 - 9288149
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  9288247 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 9288149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 17234716 - 17234810
Alignment:
Q  55 agtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac-cgagttaac 148  Q
    ||||| ||| |||||||  ||||| | ||| |||||||||||||| ||||||| |||| |||| | || |||||||||||||||| |||||||||    
T  17234716 agtttgcgtttttaggtaccaaaatcctatcaactcggaggtaaactcgatttctggtaaaatcggaatgtttgacgagtttgactcgagttaac 17234810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 43166429 - 43166331
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||   |||| ||| | ||||| |||||||| |   ||| |||| ||||||||| |||||||||||||||| ||||||||||    
T  43166429 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaataagtttctggtaaaattgaaaggtttgacgagtttgactgagttaacac 43166331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 14781851 - 14781787
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  14781851 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 14781787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 26620385 - 26620349
Alignment:
Q  114 aaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||| |||||||||||||||||||| |||||||||||    
T  26620385 aaatcgaaaagtttgacgagtttgatcgagttaacac 26620349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 44725510 - 44725446
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  44725510 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 44725446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 9818700 - 9818555
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||||||||| |||| ||||| |||||||||||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  9818700 gttccacaaatcgagtgttaacacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaat 9818601  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     | |||||||||||||||||||||||| ||||||||||||||||||    
T  9818600 cggaaagtttgacgagtttgaccgagtgaacacgtgttaaactcgg 9818555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 40064248 - 40064388
Alignment:
Q  23 acaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaa 122  Q
    |||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||| |||||| |||||||||||   ||||||||||||| ||||    
T  40064248 acaaatcgagtgttaattcgtaaattcgtccgagtttacgtttttaggtggcaaaaacgtgtaaacttggaggtaaatttagtttttggtgaaatcgaaa 40064347  T
Q  123 agtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    |||||||||| ||||||| ||||||||||||||||||||||    
T  40064348 agtttgacgaatttgaccaagttaacacgtgttaaactcgg 40064388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 190
Target Start/End: Original strand, 49293775 - 49293948
Alignment:
Q  25 aaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaag 124  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | | |  |||| ||||||||||||||||| | ||||    
T  49293775 aaatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtataaatttgaaaataaactcgatttttggtgaaatcggaaag 49293874  T
Q  125 tttgacgagtttgaccgagttaacacgtgttaaactcg--------gagtaaactcgtccgagtttacctttga 190  Q
    |||||||||||||||||| ||||||||||||||| |||        | ||||||||||||||||||||||||||    
T  49293875 tttgacgagtttgaccgaattaacacgtgttaaattcggtaaactcgtgtaaactcgtccgagtttacctttga 49293948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 37832539 - 37832681
Alignment:
Q  20 tccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattg 119  Q
    |||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||| |||||| |||| |   |||||||||||||      
T  37832539 tccataaattgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgtaaattcggagataaacttagtttttggtgaaatca 37832638  T
Q  120 aaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 162  Q
     ||||||||||||||||||||||||||||||||||||||||||    
T  37832639 gaaagtttgacgagtttgaccgagttaacacgtgttaaactcg 37832681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 27261367 - 27261531
Alignment:
Q  13 ccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggt 112  Q
    |||| ||||||||||||||||||||||||||| ||| | ||||||||  || |||| ||||||||||||| ||||||||            |||||||||    
T  27261367 ccactgttccacaaatcgagtgttaactcgtaaacttgcccgagttt--gtttttaagtggcaaaaacgtgtaaactcg------------atttttggt 27261452  T
Q  113 gaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    ||||| | |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27261453 gaaatcggaaagtttgacgaatttgactgagttaacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 27261531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 53645442 - 53645332
Alignment:
Q  25 aaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaag 124  Q
    |||||||||||||||||||| ||||||| ||||| |||| |||||||||||||||||||||||||| |||||||| ||  ||||||||||||| | ||||    
T  53645442 aaatcgagtgttaactcgtaaactcgtctgagttaacgtttttaggtggcaaaaacgtataaactcagaggtaaactcagtttttggtgaaatcggaaag 53645343  T
Q  125 tttgacgagtt 135  Q
    |||||||||||    
T  53645342 tttgacgagtt 53645332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 19387026 - 19386863
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||||||||||| ||  ||| | |||||||||||||||||||| |||||| || | |||||||| ||||| || ||| ||| | ||||    
T  19387026 gttccacaaatcgagtgttaactcataatctcatacgagtttacgtatttaggtgtcaaaaatgtgttaactcggatgtaaactcaattattgataaaat 19386927  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttac 184  Q
    || || || ||| ||||||||||||||||||||||||||||||    ||||||||| ||||||||||    
T  19386926 tggaatgtctga-gagtttgaccgagttaacacgtgttaaact--tcgtaaactcgaccgagtttac 19386863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 49296115 - 49296213
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  49296115 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacac 49296213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 8598658 - 8598756
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  8598658 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 8598756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 30238632 - 30238477
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtg-gcaaaaacgtataaactcggaggtaaattcgatttttggtgaaa 116  Q
    |||||||||||||||||||||| ||||  |||   ||||||||||| |||||||| | |||||||| | |||||||||||||||| | ||||| |  |||    
T  30238632 gttccacaaatcgagtgttaacgcgtaatctctatcgagtttacgtttttaggtgcgaaaaaacgtgttaactcggaggtaaatttggtttttaggaaaa 30238533  T
Q  117 ttgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcg 173  Q
      |||| |||||| |||||||||||| ||||||| |||||||||| |||||||||||    
T  30238532 acgaaatgtttgatgagtttgaccgaattaacacatgttaaactc-gagtaaactcg 30238477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 29690597 - 29690738
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||| |||||||||||||||||||| | ||||  |  ||||||| |||||||| |||||| |||| || |||||| |||||| | |||||| ||||||    
T  29690597 gttccataaatcgagtgttaactcgtaaattcgtttgtatttacgtttttaggtgtcaaaaatgtattaattcggagataaatttggtttttg-tgaaat 29690695  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaact 160  Q
       || || ||||||||||||||||||||||||||||||||||    
T  29690696 cagaatgtatgacgagtttgaccgagttaacacgtgttaaact 29690738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 47467479 - 47467405
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaact 160  Q
    |||||| ||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  47467479 aactcgaaggtaaactcggtttttggtgaaatcgaaaattttgacgagtttgaccgagttaacacgtgttaaact 47467405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 53835961 - 53836059
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||| ||||||||| | ||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  53835961 ccgagtttacgtgtttaggtgctaaaaacgtgttaacttggaggtaaacttgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 53836059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 16155162 - 16155261
Alignment:
Q  51 tccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| ||||||| |||||||  ||||| ||| | ||||| |||||||| ||| |||||| | |||||| || |||||||||||||||||||||||||||    
T  16155162 tccgaatttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttttgataaaattggaaggtttgacgagtttgaccgagttaacac 16155261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 183
Target Start/End: Complemental strand, 4962832 - 4962703
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgt 152  Q
    ||||||||||| |||||||  ||||| ||| | |||| ||||||||| |||||||   || |||| |||| |||||||||||||||||||||||||||      
T  4962832 cgagtttacgtttttaggtatcaaaatcgtgttaacttggaggtaaactcgatttcaagtaaaatcgaaaggtttgacgagtttgaccgagttaacactc 4962733  T
Q  153 gttaaactcggagtaaactcgtccgagttta 183  Q
    | |||||||   ||||||||| |||||||||    
T  4962732 ggtaaactc-atgtaaactcgaccgagttta 4962703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 21386586 - 21386488
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||| | |||||||  ||||| ||| | ||||  |||||||| ||||||| |||| |||| ||||||||||||||||||||||||||| ||||    
T  21386586 ccgagtttacatttttaggtatcaaaatcgtgttaacttagaggtaaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagttgacac 21386488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 22489585 - 22489488
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| |||||||| ||||||||| | || || || ||||| ||||||| |||| |||| | || |||| ||||||||||||||||||||||    
T  22489585 cgagtttacgtgtttaggtgccaaaaacgtgttaaatcagatgtaaactcgatttctggtaaaatcggaaggtttaacgagtttgaccgagttaacac 22489488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 50761854 - 50761756
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||   |||| ||| | ||||| |||||||| | ||||| ||||||||||| || |||| ||||||||||| ||||||||||    
T  50761854 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatagatttctggtgaaattggaaggtttaacgagtttgactgagttaacac 50761756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 2118572 - 2118437
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||| ||||||  |||||||||| ||| |||||||||||| ||| | ||||||||  |||||||| | |||||| ||||||| ||||||||| |||||||    
T  2118572 gttctacaaattaagtgttaactagtaaactcgtccgagtgtacat-tttaggtgcaaaaaacgtgttaactcgaaggtaaactcgattttttgtgaaat 2118474  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     ||||           ||||||||||||||||||||||||||||||    
T  2118473 cgaaa---------tatttgaccgagttaacacgtgttaaactcgg 2118437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 7665556 - 7665677
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||||||||||||   | |   || ||||||||| ||||| |  ||||| ||| | |||||||||||||| |||||||||||| ||||    
T  7665556 gttccacaaatcgagtgttaactcgccgaatttacctagtttacgtttttagctaccaaaatcgtgttaactcggaggtaaactcgatttttggtaaaat 7665655  T
Q  118 tgaaaagtttgacgagtttgac 139  Q
     | ||  |||||||||||||||    
T  7665656 cggaatatttgacgagtttgac 7665677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 9032054 - 9031942
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||| ||||||| | |||||||||||| | |||||||||||||| | |||||||||| ||||||| | |||||| || || | |  ||||||| ||||||    
T  9032054 gttcaacaaatcaaatgttaactcgtaaattcgtccgagtttacatttttaggtggccaaaacgtgttaactcgcagatatactttatttttgatgaaat 9031955  T
Q  118 tgaaaagtttgac 130  Q
    || || |||||||    
T  9031954 tgtaatgtttgac 9031942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 33693289 - 33693384
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagttt 182  Q
    |||| ||||||||| ||||||| |||| ||||   || |||||||||||||||||||||||||||  | ||||||| | ||||||||| ||||||||    
T  33693289 aacttggaggtaaactcgatttctggtaaaatcagaaggtttgacgagtttgaccgagttaacactcggtaaactc-gtgtaaactcgaccgagttt 33693384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 53645303 - 53645267
Alignment:
Q  155 taaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||||||||||||||||||||||    
T  53645303 taaactcggagtaaactcgtccgagtttacctttgaa 53645267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 25049845 - 25049967
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||||||||||||         |||||||||||| |||||||  ||||| ||| | |||||||||||||| ||||||| | || ||||    
T  25049845 gttccacaaatcgagtgttaactcg---------ccgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgatttctagtaaaat 25049935  T
Q  118 tgaaaagtttgacgagtttgac-cgagttaac 148  Q
     | || |||||| ||||||||| |||||||||    
T  25049936 cggaatgtttgatgagtttgactcgagttaac 25049967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 37455293 - 37455391
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||| |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  37455293 ccgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 37455391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 49458358 - 49458455
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| |||||||  |||||  || | ||||| || ||||| ||||||| |||| |||| | || ||||||||||||||||| | |||||||    
T  49458358 cgagtttacgtgtttaggtatcaaaattgtgttaactctgaagtaaactcgatttctggtaaaatcggaaggtttgacgagtttgaccaaattaacac 49458455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 50903062 - 50902965
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| |||| ||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  50903062 cgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 50902965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 36673872 - 36673808
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  36673872 aactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 36673808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 45602485 - 45602399
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac-cgagttaacacgtgttaaactcggagtaaactcg 173  Q
    |||||| ||||||| || |||| |||| |||| |||| |||||||||||||||| ||||||||| || || |||||||| |||||||||    
T  45602485 aactcgtaggtaaactcaatttctggtaaaatcgaaatgtttgacgagtttgactcgagttaactcg-gtcaaactcgg-gtaaactcg 45602399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 21238893 - 21238729
Alignment:
Q  20 tccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattg 119  Q
    |||||||||||||||||||| |||| | |||||||| ||||||| ||||| |||||||||||| | |||||||||||||| ||| |||||||| |||| |    
T  21238893 tccacaaatcgagtgttaacacgtaaattcgtccgattttacgtttttagatggcaaaaacgtgttaactcggaggtaaactcggtttttggtaaaatcg 21238794  T
Q  120 aaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttac 184  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  21238793 gaaagtttgacgagtttgaccgagttaacacatgttaaactcggagtaaactcgttcgagtttac 21238729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 2675206 - 2675065
Alignment:
Q  22 cacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaa 121  Q
    |||||||||||||||||  |||| ||||| |||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||||||||||| |||    
T  2675206 cacaaatcgagtgttaatacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcgaa 2675107  T
Q  122 aagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  2675106 aagtttgacgagtttgaccgagttaacacgtgttaaaatcgg 2675065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Complemental strand, 33892974 - 33892834
Alignment:
Q  22 cacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaa 121  Q
    |||||||||||||||||| |||| | |||| ||| ||||||| |||||||||||||||||| | |||||||||||||| |||||||||| |||||| | |    
T  33892974 cacaaatcgagtgttaacacgtaaattcgttcgaatttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttgatgaaatcgga 33892875  T
Q  122 aagtttgacgagtttgaccgagttaacacgtgttaaactcg 162  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33892874 aagtttgacgagtttgaccgagttaacacgtgttaaactcg 33892834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 34909557 - 34909702
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||||||||| |||| |||||  ||||||||||| |||||||||||||||||| | || ||||||||||| ||| | |||||||||||    
T  34909557 gttccacaaatcgagtgttaacacgtaaactcgctcgagtttacgtttttaggtggcaaaaacgtgttaattcggaggtaaactcggtctttggtgaaat 34909656  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
     | ||||||||| |||||||||||||| ||| ||||||||||||||    
T  34909657 cggaaagtttgaggagtttgaccgagtgaacgcgtgttaaactcgg 34909702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 25868764 - 25868938
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    |||||||||||||||||||||| |||| ||||| ||||||||| || |||||||||||||||||| | |||||||||||||| ||| |||||||||||||    
T  25868764 gttccacaaatcgagtgttaacacgtaaactcgcccgagtttatgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaat 25868863  T
Q  118 tgaaaagtttga-cgagtttgaccgagtt-aacacgtgttaaactcggagtaaactcgtccgagtttacctttgaa 191  Q
     | ||||||||| |||||     || ||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  25868864 cggaaagtttgaccgagtgaacacgtgttaaactcgtg-taaactcggagtaaactcgtccgagtttacctttgaa 25868938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 31913467 - 31913628
Alignment:
Q  22 cacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaa 121  Q
    ||||||||| ||||||||||||| | |||| ||| |||| || ||||| || |||||| || | |||| ||||||||| ||||||||||||||||| |||    
T  31913467 cacaaatcgtgtgttaactcgtaaattcgttcgaatttatgtttttagatgtcaaaaatgtgttaacttggaggtaaactcgatttttggtgaaatcgaa 31913566  T
Q  122 aagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtccgagtttac 184  Q
    | ||| | ||| ||||| |||||||||| ||||||||||| ||||||||||| ||||||||||    
T  31913567 atgttcgtcgaatttgatcgagttaacatgtgttaaactc-gagtaaactcgaccgagtttac 31913628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 19222988 - 19223155
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||| | ||||||||||||||||||  ||||||||            |||||||||||||    
T  19222988 gttccacaaattgagtgttaactcgtaaactcgcccgagtttacatttttaggtggcaaaaacgt-gaaactcgg------------tttttggtgaaat 19223074  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgga--------gtaaactcgtccgagtttacctttga 190  Q
     | |||||||||||||| | |||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  19223075 cggaaagtttgacgagtgtaaccgagttaacacgtgttaaactcggaaaactcgtgtaaactcgtccgagtttacctttga 19223155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 5651284 - 5651191
Alignment:
Q  57 tttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||| |||||||  ||||| ||| | |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5651284 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtgaaattgaaaagtttgacgagtttgaccgagttaacac 5651191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 7125267 - 7125169
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||||||  |||||||| | |||||||||||||| ||||||| |||| |||| | ||||||||||||||||||||||||||||||    
T  7125267 ccgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaacac 7125169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 16497867 - 16497729
Alignment:
Q  23 acaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaa 122  Q
    |||||||||||||||||||||| |||| |  |||||||||| |||||||| |||||| || | || ||  || |||| |||||||||| |||||| | ||    
T  16497867 acaaatcgagtgttaactcgtaaactcatttgagtttacgtttttaggtgccaaaaatgtgttaattcaaagataaactcgatttttgctgaaatcggaa 16497768  T
Q  123 agtttgacgagtttgaccgagttaacacgtgttaaactc 161  Q
     ||||||||||||||||||| |||||| |||||||||||    
T  16497767 tgtttgacgagtttgaccgacttaacatgtgttaaactc 16497729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 28623268 - 28623171
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||||| ||||||||  |||||||| | ||||||||| |||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||    
T  28623268 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggagataaactcgatttctggtaaaattgcaaagtttgacgagtttgaccgagttaacac 28623171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 16800694 - 16800838
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||| ||||||||||||||| |||  | ||||||||| | ||||||||  ||||| || | |||| | |||| || ||| |||| ||||||||    
T  16800694 gttccacaaatggagtgttaactcgtaaactttttcgagtttacatttttaggtgttaaaaatgttttaacttgaaggtgaactcggtttt-ggtgaaat 16800792  T
Q  118 tgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    |  || ||||||||||||||||||| ||||||| ||||||||||||    
T  16800793 tagaatgtttgacgagtttgaccgacttaacacatgttaaactcgg 16800838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 24258619 - 24258538
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaa 99  Q
    |||||| ||||||||||||||||| || | ||| | || ||||||| |||||||||||||||||| ||||||||||||||||    
T  24258619 gttccataaatcgagtgttaactcctaaattcgcctgaatttacgtttttaggtggcaaaaacgtgtaaactcggaggtaaa 24258538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 29964138 - 29964211
Alignment:
Q  89 tcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    ||||||||||||| ||||||||||||||||| || ||||||| ||||||||| ||||||||| ||||||| ||||    
T  29964138 tcggaggtaaatttgatttttggtgaaattg-aatgtttgacaagtttgaccaagttaacacatgttaaattcgg 29964211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 30010660 - 30010587
Alignment:
Q  89 tcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcgg 163  Q
    ||||||||||||| ||||||||||||||||| || ||||||| ||||||||| ||||||||| ||||||| ||||    
T  30010660 tcggaggtaaatttgatttttggtgaaattg-aatgtttgacaagtttgaccaagttaacacatgttaaattcgg 30010587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 37798222 - 37798124
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| ||||  ||  |||||||| | |||||  ||||||| || |||| |||| |||| ||||||||||||||||||||||||||||||||    
T  37798222 ccgagtttacgtgtttatctgttaaaaacgtgttaactcaaaggtaaactcaatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacac 37798124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 3032287 - 3032413
Alignment:
Q  33 tgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacga 132  Q
    |||||||| ||| |||||  ||||||||||| | |||||| ||||| ||||| | |||||||||||| ||| |||||| ||||||   || ||||| |||    
T  3032287 tgttaactagtaaactcgaacgagtttacgtctgtaggtgtcaaaatcgtattagctcggaggtaaaatcgttttttgttgaaatcataatgtttg-cga 3032385  T
Q  133 gtttgaccgagttaacacgtgttaaact 160  Q
    |||||| ||||||||||| || ||||||    
T  3032386 gtttgagcgagttaacacatggtaaact 3032413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 37014302 - 37014400
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||| | |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| ||||||||| |||| ||||||||||||||||||||||    
T  37014302 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattgaaaggtttaacgagtttgaccgagttaacac 37014400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 39852819 - 39852916
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| | |||||||   |||| ||| | ||||| |||||||| |||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  39852819 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttttggtaaaattggaaggtttaacgagtttgacggagttaacac 39852916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 148
Target Start/End: Complemental strand, 16548946 - 16548850
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac-cgagttaac 148  Q
    ||||||||||| |||||||  ||||| ||| | |||||||||||||| || |||| |||| |||| |||| ||||||||| |||||| |||||||||    
T  16548946 cgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcaatttctggtaaaatcgaaatgtttgacgaatttgactcgagttaac 16548850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 34909713 - 34909749
Alignment:
Q  155 taaactcggagtaaactcgtccgagtttacctttgaa 191  Q
    |||||||||||||||||||||||||||||||||||||    
T  34909713 taaactcggagtaaactcgtccgagtttacctttgaa 34909749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 148
Target Start/End: Original strand, 29758706 - 29758801
Alignment:
Q  53 cgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgac-cgagttaac 148  Q
    ||||||||||| |||||||  ||||| ||| | |||||||||||| ||| ||||| |||| |||| | || |||||||||||||||| |||||||||    
T  29758706 cgagtttacgtttttaggtatcaaaatcgtgttaactcggaggtagatttgatttctggt-aaatcggaatgtttgacgagtttgactcgagttaac 29758801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 4550012 - 4549917
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaa 147  Q
    |||||||||||| |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| |||||||    
T  4550012 ccgagtttacgtgtttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaa 4549917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 5949562 - 5949657
Alignment:
Q  55 agtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||||| |||||||   |||| ||| | ||||| |||||||| ||| ||| |||| |||||| || |||| ||||||||||| ||||||||||    
T  5949562 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacac 5949657  T

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Target: scaffold0246 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 1326 - 1514
Alignment:
Q  12 tccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttgg 111  Q
    ||||| ||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||| | | |||| ||||||||| ||| ||||| |    
T  1326 tccactgtttcacaaatcgagtgttaactcgtaaactcgaccgagtttacgtttttaggtggcaaaaacatgttaacttggaggtaaactcggtttttag 1425  T
Q  112 tgaaattgaaaagtttgacgagtttgaccgagttaacacgtgt----------taaactcggagtaaactcgtccgagtttacctttga 190  Q
    |||||| | |||||||||||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||||||||    
T  1426 tgaaatcggaaagtttgacgagtttaaccgagttaacacgtgttaaactcgtgtaaactcggagtaaactcgtccgagtttacctttga 1514  T

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Target: scaffold0246; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 25735 - 25571
Alignment:
Q  18 gttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaat 117  Q
    ||||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||||| | |||||||||||||| ||| |||||||     |    
T  25735 gttccacaaatcgagtgttaactcgtaaactc-tctgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttgg-----t 25642  T
Q  118 tgaaaagtttgacgagtttgaccgagtt-aacacgtgttaaactcggagtaaactcgtccgagtttaccttt 188  Q
    ||||||||||||||||||||  || ||| ||| |||| ||||||||||||||||||||||||||||||||||    
T  25641 tgaaaagtttgacgagtttgttcgtgttaaactcgtg-taaactcggagtaaactcgtccgagtttaccttt 25571  T

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Target: scaffold0421 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 191
Target Start/End: Original strand, 1732 - 1846
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacg---------tgttaaactcggagtaaactcgtcc 176  Q
    |||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||    
T  1732 aactcggaggtaaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaacacgtgttaaacttgttaaactcggagtaaactcgtcc 1831  T
Q  177 gagtttacctttgaa 191  Q
    |||||||||||||||    
T  1832 gagtttacctttgaa 1846  T

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Target: scaffold0433 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 349 - 447
Alignment:
Q  12 tccaccgttccacaaatcgagtgttaactcgtacactcgtccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttg 110  Q
    ||||| ||| |||||||||||||||||| |||| |||||| ||||||||||| |||| ||||||||||||| | |||||||||||||| ||| ||||||    
T  349 tccactgtttcacaaatcgagtgttaacacgtaaactcgttcgagtttacgtttttatgtggcaaaaacgtgttaactcggaggtaaactcggtttttg 447  T

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Target: scaffold1128 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 1006 - 908
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||||| |||||||  ||||| ||| | |||||||||||||| ||| ||| |||| |||| | ||||||||| ||||||||||||||||||||    
T  1006 ccgagtttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcggtttctggtaaaatcggaaagtttgatgagtttgaccgagttaacac 908  T

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Target: scaffold0543 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 10972 - 11070
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    |||||||||| | |||||||   |||| ||| | ||||| ||||||||||||||||||||| |||||| || |||| ||||||||||| ||||||||||    
T  10972 ccgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcgatttttggtaaaattggaaggtttaacgagtttgactgagttaacac 11070  T

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Target: scaffold0383 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 16749 - 16664
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactc 172  Q
    ||||| |||||||| ||| ||| |||| |||| |||| |||| ||||||||||| |||||||||| || ||||||||| ||||||||    
T  16749 aactctgaggtaaactcggtttctggtaaaatcgaaaggtttaacgagtttgactgagttaacacttggtaaactcgg-gtaaactc 16664  T

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Target: scaffold0152 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 20985 - 20900
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactc 172  Q
    ||||| |||||||| ||| ||| |||| |||| |||| |||| ||||||||||| |||||||||| || ||||||||| ||||||||    
T  20985 aactctgaggtaaactcggtttctggtaaaatcgaaaggtttaacgagtttgactgagttaacacttggtaaactcgg-gtaaactc 20900  T

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Target: scaffold0152; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 28816 - 28901
Alignment:
Q  86 aactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacgtgttaaactcggagtaaactc 172  Q
    ||||| |||||||| ||| ||| |||| |||| |||| |||| ||||||||||| |||||||||| || ||||||||| ||||||||    
T  28816 aactctgaggtaaactcggtttctggtaaaatcgaaaggtttaacgagtttgactgagttaacacttggtaaactcgg-gtaaactc 28901  T

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Target: scaffold0110 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 162
Target Start/End: Complemental strand, 39389 - 39279
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacg 151  Q
    |||||||||||| |||||||  ||||| ||| | ||| | ||||| || ||| ||| |||| |||| |||| |||||||||||||||| |||||| |||     
T  39389 ccgagtttacgtttttaggtaccaaaatcgtgttaaccctgaggtcaactcggtttctggtaaaatcgaaaggtttgacgagtttgactgagttagcact 39290  T
Q  152 tgttaaactcg 162  Q
    || ||||||||    
T  39289 tgataaactcg 39279  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 89320 - 89377
Alignment:
Q  93 aggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacac 150  Q
    ||||||| ||||||| |||| |||||| || ||||||||||||||| |||||||||||    
T  89320 aggtaaactcgatttctggtaaaattggaaggtttgacgagtttgatcgagttaacac 89377  T

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Target: scaffold1504 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 159
Target Start/End: Original strand, 1314 - 1421
Alignment:
Q  52 ccgagtttacgtatttaggtggcaaaaacgtataaactcggaggtaaattcgatttttggtgaaattgaaaagtttgacgagtttgaccgagttaacacg 151  Q
    |||||||||||| |||||||   |||| ||| | ||||| |||||||| ||| ||| | || |||||| || |||| ||||||||||| ||||||||||     
T  1314 ccgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttcttgtaaaattggaaggtttaacgagtttgactgagttaacact 1413  T
Q  152 tgttaaac 159  Q
     |||||||    
T  1414 cgttaaac 1421  T

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