View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20422_low_11 (Length: 205)

Name: NF20422_low_11
Description: NF20422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20422_low_11
NF20422_low_11
[»] chr6 (4 HSPs)
chr6 (1-71)||(164294-164364)
chr6 (65-112)||(164392-164439)
chr6 (111-158)||(31665652-31665699)
chr6 (117-181)||(15296151-15296215)
[»] chr4 (4 HSPs)
chr4 (1-71)||(18208045-18208115)
chr4 (65-112)||(18207970-18208017)
chr4 (109-185)||(12094852-12094927)
chr4 (111-156)||(4883609-4883654)
[»] chr5 (4 HSPs)
chr5 (111-189)||(22482581-22482658)
chr5 (108-181)||(37337320-37337393)
chr5 (111-185)||(26110688-26110762)
chr5 (110-156)||(36434662-36434708)
[»] chr1 (4 HSPs)
chr1 (109-161)||(24819181-24819233)
chr1 (109-160)||(15700719-15700770)
chr1 (111-158)||(22964007-22964054)
chr1 (111-162)||(44508601-44508652)
[»] chr2 (2 HSPs)
chr2 (111-160)||(32281486-32281535)
chr2 (111-183)||(28926075-28926146)
[»] chr3 (3 HSPs)
chr3 (111-181)||(1529165-1529235)
chr3 (111-181)||(15291461-15291529)
chr3 (111-158)||(49235500-49235547)
[»] chr8 (4 HSPs)
chr8 (111-181)||(23828343-23828413)
chr8 (111-158)||(42315342-42315389)
chr8 (111-158)||(45244308-45244355)
chr8 (111-180)||(7496758-7496827)


Alignment Details
Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 164294 - 164364
Alignment:
Q  1 tgcattagtaattgctgtttgggtagtagttgctgcacgggaaatatacatcattgaatatgtgtagttgg 71  Q
    |||||||||||||||||| |||||||||||||||  | || ||||||||||||||||||||||||||||||    
T  164294 tgcattagtaattgctgtatgggtagtagttgctcaatggaaaatatacatcattgaatatgtgtagttgg 164364  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 164392 - 164439
Alignment:
Q  65 tagttggagtgttttgggggaaatttgaatttgaacatatgcattaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  164392 tagttggagtgttttgggggaaatttgaatttgaacatatgcactaat 164439  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 31665699 - 31665652
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    ||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  31665699 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatt 31665652  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 15296151 - 15296215
Alignment:
Q  117 cttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctcca 181  Q
    |||||||||| |||||| |||||||||| | |||||||||||||| ||| |||| |||||||||||    
T  15296151 cttactaaagcttgttttgtcaagctataagtaaccctaatttttaacc-taatattttccctcca 15296215  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 18208115 - 18208045
Alignment:
Q  1 tgcattagtaattgctgtttgggtagtagttgctgcacgggaaatatacatcattgaatatgtgtagttgg 71  Q
    |||||||||||||||||| |||||||||||||||  | || ||||||||||||||||||||||||||||||    
T  18208115 tgcattagtaattgctgtatgggtagtagttgctcaatggaaaatatacatcattgaatatgtgtagttgg 18208045  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 18208017 - 18207970
Alignment:
Q  65 tagttggagtgttttgggggaaatttgaatttgaacatatgcattaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18208017 tagttggagtgttttgggggaaatttgaatttgaacatatgcactaat 18207970  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 12094927 - 12094852
Alignment:
Q  109 taatcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctccacttt 185  Q
    ||||||| |||||||||| |||||||||||||||||||  ||||||||  ||||| |||||| |||||||||||||||    
T  12094927 taatctttcttactaaagcttgtttggtcaagctattagaaaccctaa--ttttaacctaatattttccctccacttt 12094852  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 4883654 - 4883609
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaa 156  Q
    |||||||||||||||| ||||| |||||||||||| ||||||||||    
T  4883654 atcttacttactaaagcttgttaggtcaagctattcctaaccctaa 4883609  T

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Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 22482658 - 22482581
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctccactttgaaa 189  Q
    |||||| ||||||||| |||| ||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||    
T  22482658 atcttatttactaaagcttgtctggtcaagcaatt-ctcaacctaattttttaccctaatttttccctccactttgaaa 22482581  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 37337320 - 37337393
Alignment:
Q  108 ttaatcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctcca 181  Q
    |||||||| |||||||||| ||||||||||||||||| | |||||||||||||| ||| |||| |||||||||||    
T  37337320 ttaatctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacc-taatattttccctcca 37337393  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 26110688 - 26110762
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctccacttt 185  Q
    ||||| |||||||||  ||||||||||||||||| | ||||||||| |||||| |||||| |||||||||||||||    
T  26110688 atctttcttactaaaacttgtttggtcaagctataagtaaccctaa-tttttaacctaatattttccctccacttt 26110762  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 36434708 - 36434662
Alignment:
Q  110 aatcttacttactaaagtttgtttggtcaagctattactaaccctaa 156  Q
    |||||||||||||||||||||| |||||||||||   ||||||||||    
T  36434708 aatcttacttactaaagtttgtctggtcaagctaaccctaaccctaa 36434662  T

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Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 24819181 - 24819233
Alignment:
Q  109 taatcttacttactaaagtttgtttggtcaagctattactaaccctaattttt 161  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  24819181 taatcttacttaccaaagcttgtttggtcaagctattactaaccctaattttt 24819233  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 15700719 - 15700770
Alignment:
Q  109 taatcttacttactaaagtttgtttggtcaagctattactaaccctaatttt 160  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  15700719 taatctttcttactaaagtttgtttggtcaagctattagtaaccctaatttt 15700770  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 22964007 - 22964054
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    |||||||||||||||| |||| |||||||||||||  |||||||||||    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaatt 22964054  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 162
Target Start/End: Original strand, 44508601 - 44508652
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatttttt 162  Q
    ||||| ||| |||||| |||| || |||||||||||||||||||||||||||    
T  44508601 atctttctttctaaagcttgtctgatcaagctattactaaccctaatttttt 44508652  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 32281486 - 32281535
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatttt 160  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  32281486 atctttcttactaaagtttgtttggtcaagctattagtaaccctaatttt 32281535  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 28926075 - 28926146
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctccact 183  Q
    ||||| |||||||||| |||| |||||||||||||| ||||||||| || ||| |||||||||||||||||||    
T  28926075 atctttcttactaaagcttgtctggtcaagctattagtaaccctaa-ttcttaacctaatttttccctccact 28926146  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 1529165 - 1529235
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctcca 181  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||||||| || |||  | ||||||||||||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctcca 1529235  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 15291461 - 15291529
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctcca 181  Q
    ||||| |||||||||| ||||||||||||||||||  | |||||||  | ||| |||||||||||||||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaa--tcttaacctaatttttccctcca 15291529  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 49235547 - 49235500
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    ||||| |||||||||||||||||||||||||||| | | |||||||||    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaatt 49235500  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 23828343 - 23828413
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaat-ttttccctcca 181  Q
    ||||| ||||||| || ||||||||||||||||||| |||||||||||||| ||| |||| |||||||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacc-taatattttccctcca 23828413  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Original strand, 42315342 - 42315389
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    ||||| |||||||||| ||||||||||||||||||| |||||||||||    
T  42315342 atctttcttactaaagcttgtttggtcaagctattagtaaccctaatt 42315389  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 45244355 - 45244308
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaatt 158  Q
    ||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  45244355 atctttcttactaaagtttgtctggtcaagctattagtaaccctaatt 45244308  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 7496758 - 7496827
Alignment:
Q  111 atcttacttactaaagtttgtttggtcaagctattactaaccctaattttttaccctaatttttccctcc 180  Q
    ||||| |||||||||| ||||||| |||||||||  || |||||||| ||| | |||| |||||||||||    
T  7496758 atctttcttactaaagcttgtttgatcaagctatagctgaccctaatatttaaacctattttttccctcc 7496827  T

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