View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20422_low_3 (Length: 527)
Name: NF20422_low_3
Description: NF20422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20422_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 8996243 - 8996542
Alignment:
| Q |
6 |
gagtgagatgaataaaaacaatatagataagcatgtgatttatacttgaagaaggacaaatatgagaggtggatcatttaaaacagaatagggtattgaa |
105 |
Q |
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| T |
8996243 |
gagtaagatgaataaaaacaatatagataagcatgtgatttatacttgaagaaggacaaatatgagaggtggatcatttaaaacagaatagggtattgaa |
8996342 |
T |
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| Q |
106 |
cttggatagatcatttacaaatttatcaatctttgtatgcaggatatgggttgggtttatggcaaaaacaaataatcaaatttattgaaaaattcatgaa |
205 |
Q |
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| T |
8996343 |
cttggatatatcatttaaaaatttatcaatctttgtatgcaggatatgggttgggtctatggcaaaaacaaataatcaaatttattgaaatattcatgaa |
8996442 |
T |
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| Q |
206 |
tcnnnnnnngagcaacatcaaacctggtggtgatgctaatgttgatgagaattcatagcagcattttatcaaacacatcgtgtgcaccctacgaattcac |
305 |
Q |
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| T |
8996443 |
tcaaaaaaagagcaacatcaaacctggtggtgatgctaatgttgatgagaattcatagcagcattttatcaaacacatcgtgtgcaccctacgaattcac |
8996542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 379 - 508
Target Start/End: Original strand, 8996616 - 8996745
Alignment:
| Q |
379 |
tgagcaaggaaactgcaataacttaattatcaatttaccttctcatcggtgagcaccatctcgagaatttgtctgatcaggattcaaaaaggttggaacc |
478 |
Q |
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| T |
8996616 |
tgagcaaggaaactgcaataacttaattatcaatttaccttctcatcgatgagcaccatctcgagaatttgtctgatcaggattcaaaaaggttggaacc |
8996715 |
T |
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| Q |
479 |
tcccaaattcttacaatgtgtagcttaatc |
508 |
Q |
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| T |
8996716 |
tcccaaattcttacaatgtgtagcttaatc |
8996745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 127 - 280
Target Start/End: Complemental strand, 8983414 - 8983261
Alignment:
| Q |
127 |
tttatcaatctttgtatgcaggatatgggttgggtttatggcaaaaacaaataatcaaatttattgaaaaattcatgaatcnnnnnnngagcaacatcaa |
226 |
Q |
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| T |
8983414 |
tttatcaatctttgtatgcaggatatgaattgggtttatggcaaaaacaaataatcaaatttattgaaacattcatgaatcaaaaaaagagcaacatcaa |
8983315 |
T |
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| Q |
227 |
acctggtggtgatgctaatgttgatgagaattcatagcagcattttatcaaaca |
280 |
Q |
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| T |
8983314 |
accttgtagtgatactaatgttgatgagaattcacaacagcagtttatcaaaca |
8983261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 124 - 291
Target Start/End: Complemental strand, 32241088 - 32240914
Alignment:
| Q |
124 |
aaatttatcaatctttgtatgcaggatatgggttgggtttatggc----------aaaaacaaataatcaaatttattgaaaaattcatgaatcnnnnnn |
213 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||||||| |||||||||| |
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| T |
32241088 |
aaatttaacaatctttgtatgcaggatatggattgggtttatgacaaaacaaattaaaaacaaataagcaaatttattgaaatattcatgaataaaaaaa |
32240989 |
T |
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| Q |
214 |
ngagcaacatcaaacctggtggtgatgctaatgttgatgagaattcatagcagcattttatcaaacacatcgtgtgca |
291 |
Q |
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| T |
32240988 |
ataccaatatcaaac---atggtgatcttaatgttgatgagaactcactgcagcattttatcaaacacattgtgtgca |
32240914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 113 - 172
Target Start/End: Complemental strand, 45148413 - 45148354
Alignment:
| Q |
113 |
agatcatttacaaatttatcaatctttgtatgcaggatatgggttgggtttatggcaaaa |
172 |
Q |
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| T |
45148413 |
agataatttagaaatttaccaatctatgtatgcaggatatggattgggcttatggcaaaa |
45148354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 46267626 - 46267685
Alignment:
| Q |
113 |
agatcatttacaaatttatcaatctttgtatgcaggatatgggttgggtttatggcaaaa |
172 |
Q |
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| T |
46267626 |
agataatttagaaatttaccaatctatgtatgcaggatatggattaggcttatggcaaaa |
46267685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 46267759 - 46267816
Alignment:
| Q |
234 |
ggtgatgctaatgttgatgagaattcatagcagcattttatcaaacacatcgtgtgca |
291 |
Q |
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| T |
46267759 |
ggtgatgctaatgttgatgaggattcacttctgcattttatcaaacacgttgtgtgca |
46267816 |
T |
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