View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20422_low_6 (Length: 266)

Name: NF20422_low_6
Description: NF20422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20422_low_6
NF20422_low_6
[»] chr5 (10 HSPs)
chr5 (68-248)||(12666003-12666189)
chr5 (5-47)||(31613145-31613187)
chr5 (5-47)||(31704926-31704968)
chr5 (5-47)||(40454058-40454100)
chr5 (5-46)||(12332335-12332376)
chr5 (5-45)||(12332477-12332517)
chr5 (5-45)||(13761669-13761709)
chr5 (5-45)||(31613288-31613328)
chr5 (5-45)||(31705069-31705109)
chr5 (5-45)||(40454201-40454241)
[»] chr7 (7 HSPs)
chr7 (5-48)||(28061318-28061361)
chr7 (5-46)||(42593533-42593574)
chr7 (5-45)||(28061462-28061502)
chr7 (5-45)||(38798068-38798108)
chr7 (5-45)||(38798347-38798387)
chr7 (5-45)||(42593392-42593432)
chr7 (5-45)||(45645507-45645547)
[»] chr4 (4 HSPs)
chr4 (5-53)||(41887559-41887607)
chr4 (5-46)||(32459470-32459511)
chr4 (5-45)||(32459330-32459370)
chr4 (5-45)||(41887708-41887748)
[»] chr2 (7 HSPs)
chr2 (5-49)||(8847927-8847971)
chr2 (5-49)||(43941848-43941892)
chr2 (5-48)||(3951246-3951289)
chr2 (5-48)||(3951390-3951433)
chr2 (5-47)||(3286635-3286677)
chr2 (5-46)||(3286493-3286534)
chr2 (5-45)||(43941993-43942033)
[»] chr3 (4 HSPs)
chr3 (5-48)||(29932347-29932390)
chr3 (5-48)||(29981501-29981544)
chr3 (5-45)||(29932491-29932531)
chr3 (5-45)||(29981645-29981685)
[»] chr1 (5 HSPs)
chr1 (5-48)||(42589168-42589211)
chr1 (5-48)||(44013065-44013108)
chr1 (5-46)||(44012923-44012964)
chr1 (5-45)||(9661895-9661935)
chr1 (5-45)||(42589312-42589352)
[»] chr8 (7 HSPs)
chr8 (5-47)||(42190-42232)
chr8 (5-47)||(10543625-10543667)
chr8 (5-47)||(16586718-16586760)
chr8 (5-47)||(42781471-42781513)
chr8 (5-46)||(16586861-16586902)
chr8 (5-45)||(10543768-10543808)
chr8 (5-45)||(42781614-42781654)
[»] chr6 (4 HSPs)
chr6 (5-47)||(34733697-34733739)
chr6 (5-46)||(28469855-28469896)
chr6 (5-46)||(34733840-34733881)
chr6 (5-45)||(31503741-31503781)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 68 - 248
Target Start/End: Original strand, 12666003 - 12666189
Alignment:
Q  68 gagggaatgtatactttttacttaatcttctttgtaaagttttcaaatacggtcgaacaatgggagcaataattgtgaaacacatgtgtata-------- 159  Q
    |||||||||||||| ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  12666003 gagggaatgtatacattttacttaatctt---tgtaaagttttcaaatacggtcgaacaatgggagcaataattgtgaaacacatgtgtatatataatat 12666099  T
Q  160 -atctcttttattttttctattaccatatttagatatagcacctttttccaaaggagtacattttcatttcctttcttcccccacttact 248  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12666100 gatctcttttattttttctattaccatatttagatatagcacctttttccaaaggagtacattttcatttcctttcttcccccacttact 12666189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 31613187 - 31613145
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctt 47  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  31613187 tatccttaacatgtgcaaatttgcacatgttagaaaaatcctt 31613145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 31704968 - 31704926
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctt 47  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  31704968 tatccttaacatgtgcaaatttgcacatgttagaaaaatcctt 31704926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 40454100 - 40454058
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctt 47  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  40454100 tatccttaacatgtgcaaatttgcacatgttagaaaaatcctt 40454058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 12332376 - 12332335
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcct 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  12332376 tatccttaacatgtgcaaatttgcacatgttagaaaaatcct 12332335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 12332477 - 12332517
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  12332477 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 12332517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 13761709 - 13761669
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  13761709 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 13761669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 31613288 - 31613328
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  31613288 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 31613328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 31705069 - 31705109
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  31705069 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 31705109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 40454201 - 40454241
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  40454201 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 40454241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 28061361 - 28061318
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatccttt 48  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||    
T  28061361 tatctttaacatgtgcaaatttgcacatgttagaaaaatccttt 28061318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 42593533 - 42593574
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcct 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  42593533 tatccttaacatgtgcaaatttgcacatgttagaaaaatcct 42593574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 28061462 - 28061502
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  28061462 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 28061502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 38798108 - 38798068
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  38798108 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 38798068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 38798347 - 38798387
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  38798347 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 38798387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 42593432 - 42593392
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  42593432 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 42593392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 45645507 - 45645547
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  45645507 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 45645547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 41887607 - 41887559
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctttactta 53  Q
    |||| |||||||||| ||| ||||||||||||||||||||||| |||||    
T  41887607 tatccttaacatgtgcaaatttgcacatgttagaaaaatccttaactta 41887559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 32459470 - 32459511
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcct 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  32459470 tatccttaacatgtgcaaatttgcacatgttagaaaaatcct 32459511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32459370 - 32459330
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  32459370 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 32459330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 41887708 - 41887748
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  41887708 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 41887748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 8847927 - 8847971
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatccttta 49  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||    
T  8847927 tatccttaacatgtgcaaatttgcacatgttagaaaaatccttta 8847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 43941892 - 43941848
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatccttta 49  Q
    |||| |||||||||| ||| |||||||||||||||||||||||||    
T  43941892 tatccttaacatgtgcaaatttgcacatgttagaaaaatccttta 43941848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 3951289 - 3951246
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatccttt 48  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||    
T  3951289 tatccttaacatgtgcaaatttgcacatgttagaaaaatccttt 3951246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 3951390 - 3951433
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatccttt 48  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||    
T  3951390 tatccttaacatgtgcaaatttgcacatgttagaaaaatccttt 3951433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 3286635 - 3286677
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctt 47  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  3286635 tatccttaacatgtgcaaatttgcacatgttagaaaaatcctt 3286677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 3286534 - 3286493
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcct 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  3286534 tatccttaacatgtgcaaatttgcacatgttagaaaaatcct 3286493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 43941993 - 43942033
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  43941993 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 43942033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29932390 - 29932347
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatccttt 48  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||    
T  29932390 tatccttaacatgtgcaaatttgcacatgttagaaaaatccttt 29932347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 29981544 - 29981501
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatccttt 48  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||    
T  29981544 tatccttaacatgtgcaaatttgcacatgttagaaaaatccttt 29981501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 29932491 - 29932531
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  29932491 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 29932531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 29981645 - 29981685
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  29981645 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 29981685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 42589211 - 42589168
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatccttt 48  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||    
T  42589211 tatccttaacatgtgcaaatttgcacatgttagaaaaatccttt 42589168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 44013065 - 44013108
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatccttt 48  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||    
T  44013065 tatccttaacatgtgcaaatttgcacatgttagaaaaatccttt 44013108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 44012964 - 44012923
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcct 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  44012964 tatccttaacatgtgcaaatttgcacatgttagaaaaatcct 44012923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 9661935 - 9661895
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  9661935 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 9661895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 42589312 - 42589352
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  42589312 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 42589352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 42232 - 42190
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctt 47  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  42232 tatccttaacatgtgcaaatttgcacatgttagaaaaatcctt 42190  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 10543667 - 10543625
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctt 47  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  10543667 tatccttaacatgtgcaaatttgcacatgttagaaaaatcctt 10543625  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 16586760 - 16586718
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctt 47  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  16586760 tatccttaacatgtgcaaatttgcacatgttagaaaaatcctt 16586718  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 42781513 - 42781471
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctt 47  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  42781513 tatccttaacatgtgcaaatttgcacatgttagaaaaatcctt 42781471  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 16586861 - 16586902
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcct 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  16586861 tatccttaacatgtgcaaatttgcacatgttagaaaaatcct 16586902  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 10543768 - 10543808
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  10543768 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 10543808  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 42781614 - 42781654
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  42781614 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 42781654  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 34733739 - 34733697
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcctt 47  Q
    |||| |||||||||| ||| |||||||||||||||||||||||    
T  34733739 tatccttaacatgtgcaaatttgcacatgttagaaaaatcctt 34733697  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 28469896 - 28469855
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcct 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  28469896 tatccttaacatgtgcaaatttgcacatgttagaaaaatcct 28469855  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 34733840 - 34733881
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcct 46  Q
    |||| |||||||||| ||| ||||||||||||||||||||||    
T  34733840 tatccttaacatgtgcaaatttgcacatgttagaaaaatcct 34733881  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 31503781 - 31503741
Alignment:
Q  5 tatctttaacatgtgtaaacttgcacatgttagaaaaatcc 45  Q
    |||| |||||||||| ||| |||||||||||||||||||||    
T  31503781 tatccttaacatgtgcaaatttgcacatgttagaaaaatcc 31503741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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