View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20423_low_1 (Length: 411)
Name: NF20423_low_1
Description: NF20423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20423_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 31694332 - 31694512
Alignment:
| Q |
23 |
agttcctcactatcacactctgcacctctacttttccccattctgcagaaacagaactatcttataattcacatgttctcatttcagcttaaattcttaa |
122 |
Q |
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| T |
31694332 |
agttcctcactatcacactctgcacctctactcttccccattctgcagaaacaaaactctcttataattcacatgttctcatttcagcttaaattcttaa |
31694431 |
T |
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| Q |
123 |
cctttgttaaaaataacataaccacatcaagttttacacaacaaatctcactgtgttcatagattcaaaacaatcaaacat |
203 |
Q |
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| T |
31694432 |
cctttgttaaaaataacataaccacatcaagttttacacaacaaatcccactgtgttcatatattcaaaacaatcaaacat |
31694512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 233 - 394
Target Start/End: Original strand, 31694533 - 31694694
Alignment:
| Q |
233 |
caaatgcaaatgatttacatttagccattatttacaaatctcatattctatttcaatttaaactgcattttctggaaaatcaaggatctggataattgca |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
31694533 |
caaatgcaaatgatttacatttagccattatttacaaatctcgtattctatttcaatttaaactgcattttctgaaaaatcaaggatctggataattaca |
31694632 |
T |
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| Q |
333 |
agagatgaactttgaaggacaagcacacattatggtgctttgaacttgcgagcatctttttt |
394 |
Q |
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| T |
31694633 |
agagatgaactttgaaggacaagcacacatcatggtgctttgaacttgcgagcatcgttttt |
31694694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 45534198 - 45534378
Alignment:
| Q |
23 |
agttcctcactatcacactctgcacctctacttttccccattctgcagaaacagaactatcttataattcacatgttctcatttcagcttaaattcttaa |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
45534198 |
agttcctcactatcacactctgcacctctacttttccccattctgcagaaacaaaactctcttataattcacatgttctcatttctacttaaattcttaa |
45534297 |
T |
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| Q |
123 |
cctttgttaaaaataacataaccacatcaagttttacacaacaaatctcactgtgttcatagattcaaaacaatcaaacat |
203 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
45534298 |
cctttgttaaaaataacataaccgcatcaagttttacacaacaaatcccattgtgttcatagattcaaaacaatcaaacat |
45534378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 233 - 394
Target Start/End: Original strand, 45534414 - 45534575
Alignment:
| Q |
233 |
caaatgcaaatgatttacatttagccattatttacaaatctcatattctatttcaatttaaactgcattttctggaaaatcaaggatctggataattgca |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||||| |
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| T |
45534414 |
caaatgcaaatgatttacatttagccattatttacaaatctcatattctatttcaatttaaactgcattttttagaaaatcaaggatttggataattgca |
45534513 |
T |
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| Q |
333 |
agagatgaactttgaaggacaagcacacattatggtgctttgaacttgcgagcatctttttt |
394 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| |
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| T |
45534514 |
agagatgaactttgaaggacaagcacacatcatggtgctttgaacttccgagcatcgttttt |
45534575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 38913837 - 38913792
Alignment:
| Q |
246 |
tttacatttagccattatttacaaatctcatattctatttcaattt |
291 |
Q |
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|||||||||||| |||||||||||| ||| |||||||||||||||| |
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| T |
38913837 |
tttacatttagctattatttacaaagctcctattctatttcaattt |
38913792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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