View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_high_1 (Length: 691)
Name: NF20424_high_1
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 1e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 19403404 - 19403658
Alignment:
| Q |
18 |
aacaccaccatcaatggcattatatatactgacaagcatcttgctatctataaagttggcaaagtacttcttcctatggatttcttttccgttgctaagg |
117 |
Q |
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||||| || ||| ||||||||||||||||||| || | ||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
19403404 |
aacacaacgatcgatggcattatatatactgataaacgtcttgctatttataaagttggcaaagtgcttcttcctatggatttcttttctgttgctaagg |
19403503 |
T |
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| Q |
118 |
caccggggaaggcaccatctttggcaccggaaccttcagcaatgactcctaaagctggtaatgggaagccactatcaccagattcctcagat--atctca |
215 |
Q |
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|||| |||| || ||||||||||| || |||||| |||||||||| ||||| | ||| | ||||||| |||| ||||||||||||||| |||| |
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| T |
19403504 |
caccaacaaagggactgtctttggcaccagagccttcaacaatgactccaaaagccgataaggagaagccattatcgccagattcctcagattcatct-- |
19403601 |
T |
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| Q |
216 |
ggttaaacccgcaaatgataactctggtactgtgaaaatcaatgcttatggaaagtgg |
273 |
Q |
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||||||||| ||||||||||||||||| |||||||| | |||| ||||||| |||| |
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| T |
19403602 |
-gttaaacccacaaatgataactctggtgctgtgaaagtgaatgtgtatggaaggtgg |
19403658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 22059665 - 22059802
Alignment:
| Q |
18 |
aacaccaccatcaatggcattatatatactgacaagcatcttgctatctataaagttggcaaagtacttcttcctatggatttcttttccgttgctaagg |
117 |
Q |
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||||| || |||||||||||||||||||| || || | ||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22059665 |
aacacgacaatcaatggcattatatataccgataaacgtcttgctatttacaaagttggcaaagtgcttcttcctatggatttcttttccgttgctaagg |
22059764 |
T |
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| Q |
118 |
caccggggaaggcaccatctttggcaccggaaccttca |
155 |
Q |
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| T |
22059765 |
caccggggaaggcaccatctttggcaccagaaccttca |
22059802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 18 - 155
Target Start/End: Complemental strand, 22075518 - 22075381
Alignment:
| Q |
18 |
aacaccaccatcaatggcattatatatactgacaagcatcttgctatctataaagttggcaaagtacttcttcctatggatttcttttccgttgctaagg |
117 |
Q |
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||||| || |||||||||||| ||||||| || |||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
22075518 |
aacacgacaatcaatggcattgtatataccgataagcgtcttgctatttataaagttggtaaagtgcttcttcctatggatttcttttccgttgctaagg |
22075419 |
T |
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| Q |
118 |
caccggggaaggcaccatctttggcaccggaaccttca |
155 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |
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| T |
22075418 |
caccggggaaggcaccatctttggcaccagaaccttca |
22075381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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