View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20424_high_13 (Length: 371)
Name: NF20424_high_13
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 100 - 355
Target Start/End: Original strand, 9813993 - 9814246
Alignment:
| Q |
100 |
attgataaatagaaaacgaatgaacaaatcaattgaagaaacaatattttattaaactaaaaccactttataacaatggctttacatagtgtgtgcttaa |
199 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9813993 |
attgataaagagaaaacgaacgaacaaatgaattgaagaaacgatattttattaaactaaaaccactttataacaatggctttacatagtgtgtgcttaa |
9814092 |
T |
|
| Q |
200 |
tttcatgaagaacaatcttcacaatataaaaccacacacatatgtttgatcacaacaacataatagaaaaacacaaagacttactacacacacatacaaa |
299 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9814093 |
tttcatgaagaataatcttcacaatataaaaccacacac--atgtttgatcacaacaacataatagaaaaacacaaagact---tacacacacatacaaa |
9814187 |
T |
|
| Q |
300 |
ctattacatcgaatgccttattataatat---taatcaacaaaacaaagaagtacatga |
355 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
9814188 |
ctattacatcgaatgccttattataatattaataatcaacaaaacaaagaagtacatga |
9814246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 9813898 - 9813952
Alignment:
| Q |
12 |
agagaacggtgatattactctacaatatcgataaacgaataatacttttcactaa |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9813898 |
agagaacggtgatattactctacaatatcgataaacgaataatacttttcactaa |
9813952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 47 - 174
Target Start/End: Complemental strand, 49060366 - 49060239
Alignment:
| Q |
47 |
cgaataatacttttcactaaacttcaatcatcgatgaatgcgagacaaatgcaattgataaatagaaaacgaatgaacaaatcaattgaagaaacaatat |
146 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
|
|
| T |
49060366 |
cgaataatacttttcactaaacttcaaccatcgttgaatgcaaggcaaatgcaattgataaagagaaaacgaatgaacaaatcaattgaagaaaataaac |
49060267 |
T |
|
| Q |
147 |
tttattaaactaaaaccactttataaca |
174 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
49060266 |
tttattaaactaaaaccactttacaaca |
49060239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University