View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20424_high_14 (Length: 364)
Name: NF20424_high_14
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 20777733 - 20778067
Alignment:
| Q |
1 |
catctccgattgaaaattcatccggggtcataagtctaagaaccaactttttctgctcttctcagatggagtttgtcgcat-ggaaaacaaattcttccc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
20777733 |
catctccgattgaaaattcatccggggtcataagtctaagaaccaactttttcaactcttctaagatggagtttgtcacattggaaaacaaatttttccc |
20777832 |
T |
|
| Q |
100 |
caaacaacaattcgtcacggttcatcaacttaaagtataaatatatgagataaattgcgagacatatttgaagatttattagatagattgtgggactcat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20777833 |
caaacaacaattcgtcacggttcatcaacttaaagtataaatatatgagataaattgtgagacatatttgaagatttattagatagattgtgggactcat |
20777932 |
T |
|
| Q |
200 |
tttcgttcgaataaaaactgaataatgtactttaaagtaatgtggtggtacaagtatctcacatgtttagattcgtggtgagtttgacagaattattatt |
299 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20777933 |
ttttgttcgagtaaaaacagaataatgtactttaaagtaatgtggcggtacgagtatctcacatgtttagattcgtggtgagtttgacaga---attatt |
20778029 |
T |
|
| Q |
300 |
attaatccatcgtgattttacaaaccataatataatag |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20778030 |
attaatccatcgtgattttacaaaccataatataatag |
20778067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 56560019 - 56560051
Alignment:
| Q |
262 |
atgtttagattcgtggtgagtttgacagaatta |
294 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
56560019 |
atgtttggattcgtggtgagtttgacagaatta |
56560051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 33677747 - 33677792
Alignment:
| Q |
83 |
gaaaacaaattcttccccaaacaacaattcgtcacggttcatcaac |
128 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
33677747 |
gaaaacaaattattccccaaacaacaatttatcacgattcatcaac |
33677792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 7204118 - 7204150
Alignment:
| Q |
262 |
atgtttagattcgtggtgagtttgacagaatta |
294 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
7204118 |
atgtttggattcgtggtgagtttgacagaatta |
7204150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University