View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_high_17 (Length: 350)
Name: NF20424_high_17
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 35246258 - 35245948
Alignment:
| Q |
20 |
tgtaattcattttcaaataaatctagggtcgaccatttgtatccaaagtgtttttactt---aaaaaataaaaccaactttgatttttctgattttgaat |
116 |
Q |
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|||||| ||||||||||||||||||| || |||||||||| |||||||| ||||||||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
35246258 |
tgtaatccattttcaaataaatctagagttgaccatttgtctccaaagtatttttacttcttaaaaaataaaaccaacttcgatttttctgatttagaat |
35246159 |
T |
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| Q |
117 |
atgttccttattctatatgtctgttctttttctttaacttcatgcattgtgatgcagcagtctgtctttcggatctgttaatgtccaataattggtttta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
35246158 |
atgttccttattctatatgtctgttctttttctttaacctcatgaactgtgatgcatcagtctgtctttcggatctgtcaatgtccaataattggcttta |
35246059 |
T |
|
| Q |
217 |
catgatcttcatctaagagaactttaaatcaattttcatgtcattagtcaattacttttgctggatcctatgccccacatcaataaaaagttcttctgtt |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||||| ||| |||||||| |||||||||| |
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| T |
35246058 |
catgatcttcagctaagagaactttaaatcaattttcatgtgagtagtcaattaattttgatggatcctattccctacatcaat------ttcttctgtt |
35245965 |
T |
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| Q |
317 |
gcttttctgatgagaat |
333 |
Q |
| |
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|||||||| ||||||| |
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| T |
35245964 |
gcttttcttctgagaat |
35245948 |
T |
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