View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_high_2 (Length: 563)
Name: NF20424_high_2
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 311
Target Start/End: Original strand, 39915113 - 39915406
Alignment:
| Q |
18 |
ttttattatgaacaatatatcgtgattaagatttaaagataaattaataaattgagatactagtaattgatgggtttaatattaagcccacgctcggttc |
117 |
Q |
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| T |
39915113 |
ttttattatgaaccatatatcgtgattaagatttaaagataaattaataaattgagatactagtaattaatgggtttaatattaagcccacgctcggttc |
39915212 |
T |
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| Q |
118 |
tccgggaatctctctatccctcgagtggaactggcttagactttattgtgtagcgttgtttaaggtacctctttccataatattgatttcagaaaaacaa |
217 |
Q |
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| T |
39915213 |
tccgggaatctctctatccctcgagtggaactggcttagactttattgtgtagcgttgtttaaggtacctcttcccataatattgatttcagaaaaacaa |
39915312 |
T |
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| Q |
218 |
atactcctacactaaaatacaagtgaaatagggtcaactcatatgaaattcatttcagcaaattaccattaactctaagaactgatatcgagaa |
311 |
Q |
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| T |
39915313 |
atactcctacactaaaatacaagtgaaatagggtcaactcatatgaaattcatttcagcaaattaccattaactctaagaactgatatcgagaa |
39915406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 389 - 547
Target Start/End: Original strand, 39915477 - 39915626
Alignment:
| Q |
389 |
tagcaacggattcaaattttatttattttttctttcaaatatgatattttaagttaaagttgttagtgtactattaaatattatatttctgaatacgtaa |
488 |
Q |
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| T |
39915477 |
tagcaacggattcaaattttatttattttttctttcaaatatgatattttaagttaaagt---------actattaaatattatatttctgaatacgtaa |
39915567 |
T |
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| Q |
489 |
ctttcgttattgattccttagccagtgtggatactgattagtgattagcatgattcaaa |
547 |
Q |
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| T |
39915568 |
ctttcgttattgattccttagccagtgtggatactgattagtgattagcatgattcaaa |
39915626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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