View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20424_high_21 (Length: 320)

Name: NF20424_high_21
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20424_high_21
NF20424_high_21
[»] chr8 (1 HSPs)
chr8 (11-304)||(10557037-10557330)


Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 10557037 - 10557330
Alignment:
Q  11 ccaagaatatcatctctaactacgacgcaccagaaggtgtcgaagttaggggaagatatgatgcagagtttgcaaaaattctaaccaaagatgctttgaa 110  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10557037 ccaagaatatcatctctaactacgatgcaccagaaggcgtcgaagttaggggaagatatgatgcagagtttgcaaaaattctaaccaaagatgctttgaa 10557136  T
Q  111 atttgttgctgatttgcaacgtgagttcagaaaccatataaagtatgcactagagtgtagaaaagaagcaaagagaaggtacaatgaaggagctctacca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10557137 atttgttgctgatttgcaacgtgagttcagaaaccatataaagtatgcactagagtgtagaaaagaagcaaagagaaggtacaatgaaggagctctacca 10557236  T
Q  211 ggttttgatccagcaactagatacataagagaaggagattggatctgtgcacctgttccaccagctgtttctgataggaaagttgagattactg 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10557237 ggttttgatccagcaactagatacataagagaaggagattggatctgtgcacctgttccaccagctgtttctgataggaaagttgagattactg 10557330  T

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