View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_high_36 (Length: 256)
Name: NF20424_high_36
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_high_36 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26517319 - 26517558
Alignment:
| Q |
1 |
acttaactcctaacaacgtcgtgtttactatccataatcttctatgagtaaaaatcaacaaccattttgtagatatcagatttcgggtttgcaaagctaa |
100 |
Q |
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| T |
26517319 |
acttaactcctaacaacgtcgtgtttactatccataatcttctatgagtaaaaatcaacaaccattttgtagatatcagatttcgggtttgcaaagctaa |
26517418 |
T |
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| Q |
101 |
tgcaagaaggacaagagatacatgtaactgccggagtactcggcacatttgggtattttgaccccgagtatacatcggtatgcatagctaaatttcattt |
200 |
Q |
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| T |
26517419 |
tgccagaaggacaagagatacatgtaactgccggagtactcggcacatttgggtattttgaccccgagtatacatcggtatgcatagctaaatttcattt |
26517518 |
T |
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| Q |
201 |
gcaaaaaagttttgttcttatggcttattaaagtgatatt |
240 |
Q |
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| T |
26517519 |
gcaaaaaagttttgttcttatggcttattaaagtgatatt |
26517558 |
T |
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Back To:
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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 15243668 - 15243786
Alignment:
| Q |
67 |
ttgtagatatcagatttcgggtttgcaaagctaatgcaagaaggacaagagatacatgtaactgccggagtactcggcacatttgggtattttgaccccg |
166 |
Q |
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| T |
15243668 |
ttgtagatatctgatttcgggcttgccaagttaatgccagaaggacaggagacacacgtgactgccagagtcctcggcacatttggttactttgatcccg |
15243767 |
T |
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| Q |
167 |
agtatacatcggtatgcat |
185 |
Q |
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| T |
15243768 |
agtatacatcggtatgcat |
15243786 |
T |
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