View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20424_high_40 (Length: 246)
Name: NF20424_high_40
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_high_40 |
 | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42449143 - 42448916
Alignment:
| Q |
1 |
agagagccaataaaactcgcaatgattactgtattcatatgtcctaggaagcaatttgtgcaggacaagaaatgtatcatcataataaggatgattacca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42449143 |
agagagccaataaaagtcgcaatgattactgtattcatatgtcctaggaagcaatttgtgcaggacaagaaatgtatcatcataataaggatgattacca |
42449044 |
T |
|
| Q |
101 |
tggatgatattgtcggtgtacattttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42449043 |
tggatgatattgtcggtgtacattttcataaaacgaggatttccaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagg |
42448944 |
T |
|
| Q |
201 |
gaagttttgacaaaatgaagagcactat |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
42448943 |
gaagttttgacaaaatgaagagcactat |
42448916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 20425810 - 20425740
Alignment:
| Q |
142 |
ttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgaca |
212 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||| ||||| ||||| |||||||| ||||||||||||| |
|
|
| T |
20425810 |
ttcaaataaaagagaccatgcattgcatacgcattcaaatcgtttcaaagattttaaaggaagttttgaca |
20425740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 42261565 - 42261480
Alignment:
| Q |
140 |
ttttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaatgaagagcac |
225 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| ||| ||| | ||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
42261565 |
ttttcgaataagagagaccatgatttgcatacacatataaaccgcttcaatgattttaaaggcagttttgacaaaatgaagagcac |
42261480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 51869222 - 51869132
Alignment:
| Q |
125 |
ttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaa |
215 |
Q |
| |
|
||||| ||| |||| | ||||||||||||||||||| ||||| || | ||| ||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
51869222 |
ttcatgaaatgagggtcttcaaataagagagaccatggtttgtatgcacatccaaatcgtttcaaagattttaacggaagttttgacaaaa |
51869132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 29136493 - 29136437
Alignment:
| Q |
120 |
acattttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcatt |
176 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
29136493 |
acatgttcatgaaacgagtattttcaaataagagagaccatgatttgcaaacgcatt |
29136437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 215
Target Start/End: Original strand, 29353315 - 29353390
Alignment:
| Q |
140 |
ttttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaagggaagttttgacaaaa |
215 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||| | |||||| |||||||| |||||||||||||||| |
|
|
| T |
29353315 |
ttttcaaataagagagaccatgttttatttacgcatccaaaacgcttcaaagattttaaaggaagttttgacaaaa |
29353390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 31135842 - 31135920
Alignment:
| Q |
120 |
acattttcataaaacgaggattttcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattttaa |
198 |
Q |
| |
|
|||| ||||||||| ||| ||||||||||| ||||||||| |||||||||| ||| ||||| |||||| ||||||| |
|
|
| T |
31135842 |
acatgttcataaaaatagggttttcaaataaaagagaccatggtttgcatacacatgcaaatcgcttcaagaattttaa |
31135920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 17139 - 17191
Alignment:
| Q |
143 |
tcaaataagagagaccatagtttgcatacgcattgaaatctcttcaatgattt |
195 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||| |||||||||||| ||||| |
|
|
| T |
17139 |
tcaattaagagagaccatgatttgcaaacgcattcaaatctcttcaaagattt |
17191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University