View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20424_high_41 (Length: 245)

Name: NF20424_high_41
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20424_high_41
NF20424_high_41
[»] chr7 (3 HSPs)
chr7 (25-245)||(33442537-33442772)
chr7 (123-194)||(33452811-33452880)
chr7 (211-241)||(33452799-33452829)


Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 33442772 - 33442537
Alignment:
Q  25 ttgctatatttatctacgagaagcaacatatgaacaagagaaggttcaagcctcatggctattgcaaaagttggaactatta----------------tt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||                ||    
T  33442772 ttgctatatttatctacgagaagcaacatatgaacaagagaaggttcaagcttcatggctattgcaaaaattgaaactattaccgtacctcaacattatt 33442673  T
Q  109 tacaattacaatattacgttatttcttatcttagtctgaatacgatattataatttgtagttaaatcaaattaatattcaaattcttgtaaccnnnnnnn 208  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  33442672 tccaattacaatattacgttatttcttatcttagtctaaatacgatattataatttgtagttaaatcaaattaatattcaaattcttgtaacc-aaaaaa 33442574  T
Q  209 ntaaattaatattcaaattctgccaagccgtccttag 245  Q
     ||||||||||||||||||||||||||||||||||||    
T  33442573 ataaattaatattcaaattctgccaagccgtccttag 33442537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 33452880 - 33452811
Alignment:
Q  123 tacgttatttcttatcttagtctgaatacgatattataatttgtagttaaatcaaattaatattcaaattct 194  Q
    ||||||||||||||||  |||||| || | |||||||| ||||| |||||||||||||||||||||||||||    
T  33452880 tacgttatttcttatca-agtctgcatgcaatattata-tttgtggttaaatcaaattaatattcaaattct 33452811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 33452829 - 33452799
Alignment:
Q  211 aaattaatattcaaattctgccaagccgtcc 241  Q
    |||||||||||||||||||||||||||||||    
T  33452829 aaattaatattcaaattctgccaagccgtcc 33452799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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