View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_high_46 (Length: 205)
Name: NF20424_high_46
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_high_46 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 41213683 - 41213510
Alignment:
| Q |
16 |
atcatttatacaaaaggaaaagattacaacaaaatcaaactcaattgaagttcttcaacccttgatgatgatgaggaactttgttcttttcaaacccttc |
115 |
Q |
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| T |
41213683 |
atcatttatacaaaaggaaaaggttacaacaaaatcaaactcaattgaagttcttcaacccttgatgatgatgaggaactttgttcttttcaaacccttc |
41213584 |
T |
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| Q |
116 |
ttcttcaaataacaagataaagtcccacaagatgtccaattgatcctctgttcactactcctttgcgagaaact |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41213583 |
ttcttcaaataacaagataaagtcccacaagatgtccaattgatcctctgttcactactcctttgcgagaaact |
41213510 |
T |
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