View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_high_8 (Length: 450)
Name: NF20424_high_8
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 5628593 - 5629013
Alignment:
| Q |
17 |
agacagagtagcaaatctcacgttgtgggataagacttgacagcggttgttgttcttataaatttaacttttcttcgaaattttaaaatatttctaaaag |
116 |
Q |
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| T |
5628593 |
agacagagtagcatatctcacgttgtaggttaagacttgatagcggttgttgttcttataaatttaacttttcttcggaattttaaaatatttctaaaag |
5628692 |
T |
|
| Q |
117 |
attcagccctaggctaagtaagtatgagagtaattttagactttagagttctataatccagagttgaattggttaagnnnnnnnaaatatatttnnnnnn |
216 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
5628693 |
attcaaccctaggctaagtaagtatgagagtaattttaaactttagagttctataattcagagttgaattggttaagtttttt-aaatatatttaaaaaa |
5628791 |
T |
|
| Q |
217 |
nttattttgattgattatgtct----atatataaaattctttcttttaatatatttgactttggttttcttggttacattacatcaatttattgatcaat |
312 |
Q |
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||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5628792 |
attattttgattgattatgtctgtctatacataaaattcttt-ttttaatatatttgactttggttttcttggttacattacataaatttattgatcaat |
5628890 |
T |
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| Q |
313 |
gttatcccctcaataacattatgtgatgatgcaataatttcacgattggtttcaaactgatacacttataaatcaaatcgctttcatttgtgaaatattt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5628891 |
gttatcccctcaataacattatgtgatgatgcaataatttcacgattggtttcaaactgatacacttataaatcaaatcgctttcatttgtgaaatattt |
5628990 |
T |
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| Q |
413 |
aattcaagttgatataatttagt |
435 |
Q |
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||||||||||||||||||||||| |
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| T |
5628991 |
aattcaagttgatataatttagt |
5629013 |
T |
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