View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_11 (Length: 395)
Name: NF20424_low_11
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 46487152 - 46487513
Alignment:
| Q |
16 |
atgggaatctcctatttggatgctcttatatggctagcaaaagcttccacccaaactcaacaaatgtgttgactatgaagcggtaacaccgacaaaaaac |
115 |
Q |
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| T |
46487152 |
atgggtatctcctatttggatgcgcttatatggctagcaaaagcttccacccaaactcaacaaatgtgttgactatgaagcggtaacaccgacaagaaac |
46487251 |
T |
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| Q |
116 |
ccttgacaccattaataatttgaaaaggttgtatatttaaatgcatgtcggtgtaaacggacatcaaacacaccttcaatttaaaatgtcaggattatac |
215 |
Q |
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| T |
46487252 |
ccttgacaccattaataatttgaaaaggttgtatatttaaatgcatgtcggtgtaaacgaacatcaaacacaccttcaatttgaaatgtcagggttatac |
46487351 |
T |
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| Q |
216 |
ggttagccaatcaaaatgtagccttaagaaacacaagagattaaagtcagcttccatgcatgcatattcttaggtatgtatgtaacaaaagaaaatacag |
315 |
Q |
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| T |
46487352 |
ggttagccaatcaaaatgtagccttaagaaacacaagagattaaagtcagcttccatgcatgcatattcttaggtatgtatgtaacaaaagaaaatacag |
46487451 |
T |
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| Q |
316 |
tcaccatgctaaatcattaatcaatgaagcaaactagaagaagtcagaaatgcagccaagttt |
378 |
Q |
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| T |
46487452 |
tcacc-tgctaaatcattaatcaatgaagcaaactagaagaagtcaggaatgcagccaagttt |
46487513 |
T |
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