View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_16 (Length: 358)
Name: NF20424_low_16
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 28 - 310
Target Start/End: Complemental strand, 39431595 - 39431316
Alignment:
| Q |
28 |
aaatttctgactctgccaatgc-tatagctaacttgttcatattaattatatggtggagaatgatgaaccaagccaattatcaatctagcaaaaaaccat |
126 |
Q |
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| T |
39431595 |
aaatttctggctccgccaatgcctatagctaacttgttcatattaattatatggtggagaatgat----caaaccaattatcaatctagcaaaaaaccat |
39431500 |
T |
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| Q |
127 |
aaatcatgagagactagacatacccgcttgatcgacttatccattaccattaccaccaccactacccaaaatttaaaggtcaaatcttcctaactttcac |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39431499 |
aaatcatgagagactagacatacccgcttgatcgacttatccattaccattaccaccaccactacccaaaatttaaaggtcaaatcttcctaactttcac |
39431400 |
T |
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| Q |
227 |
attcaatggttcctctttcctttcactcatttcacacaaatcttcaatcataaaatactttgaacatcaactgtcgcaatcaat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39431399 |
attcaatggttcctctttcctttcactcatttcacacaaatcttcaatcataaaatactttgaacatcaactgtcacaatcaat |
39431316 |
T |
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