View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_21 (Length: 325)
Name: NF20424_low_21
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 6112799 - 6113093
Alignment:
| Q |
1 |
ttaatcatatttgtattttcgcgatttcgcaattcatatgtatattttctgtttcatttacctttctaggtttttcattcaattttatcgatttcgtcct |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
6112799 |
ttaatcatattcgtattttcgcgatttcgcaattcatatgtatattttctgtttcatttacctttctaggtttttcattcaattttatcgatttcttact |
6112898 |
T |
|
| Q |
101 |
atatttcgatatttataatcataatcgtcagaaaaacgattattctttgttttcgattatttagatttcacatgagctcgtgtgtttgtttatatatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||| |||||||||||| ||| ||||||||||||| |||| | |
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| T |
6112899 |
atatttcgatatttataatcataatcgtcagaaaaactgttgttctttgttttcgatgattcagatttcacatgcactcatgtgtttgtttatgtattat |
6112998 |
T |
|
| Q |
201 |
agtgtttctaagtttcttgtttatttgatttagcgtacttaaggtcttttgtttaattgttatccttatccgtccattcattttttaaatttatt |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| |
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| T |
6112999 |
cgtgtttctaagtttcttgtttatttgatttagcgtacttaaggtcttttgtttaactggtatccttatccttccattcatttgttaaatttatt |
6113093 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 28919012 - 28919076
Alignment:
| Q |
17 |
tttcgcgatttcgcaattcatatgtatattttct-gtttcatttacctttctaggtttttcattc |
80 |
Q |
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|||||| | ||||||||| ||||||||||||| | |||| |||||||||||||||||||| |||| |
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| T |
28919012 |
tttcgcaaattcgcaatttatatgtatatttttttgtttgatttacctttctaggtttttgattc |
28919076 |
T |
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