View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_28 (Length: 286)
Name: NF20424_low_28
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 13069985 - 13069719
Alignment:
| Q |
1 |
caatatagtaaaatattcaatgaaatatcattnnnnnnnntgaaactctcaatttcgggttaaggtggtatatctaccttctaagggtgccaagacctct |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13069985 |
caatatagtaaaatattcaatgaaatatcattaaaaaaaatgaaactctcaatttcgggttaaggtggtatatctaccttctaagggtgccaagacctct |
13069886 |
T |
|
| Q |
101 |
attccccatggtaagaccatcaagaggtacttgttcaattgcttcacataatttctcacgagcatctccccaatagacctttactagtaccacaacctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13069885 |
attccccatggtaagaccatcaagaggtacttgttcaattgcttcacataatttctcacgagcatctccccaatagacctttactagtaccacaacctat |
13069786 |
T |
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| Q |
201 |
gccacacaaaatctcaaagttactaaaataaaaccttcattaataatatatgaataaaacatgatct |
267 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13069785 |
gccacacaaaatctcaaagttactaaaataaaacctacattaataatatatgaataaaacatgatct |
13069719 |
T |
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