View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_29 (Length: 275)
Name: NF20424_low_29
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 258
Target Start/End: Original strand, 30412006 - 30412248
Alignment:
| Q |
16 |
ataaagcataatacctacaattttactcctaacctttttctcattgtcatttttgtgaagattacctaaccaaggagagtgatgtatacaattttggggt |
115 |
Q |
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| T |
30412006 |
ataaagcataatacctacaattttactcctaacctttttctcattgtcatttttgtgaagattacctaaccaaggagaatgatgtatacaattttggggt |
30412105 |
T |
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| Q |
116 |
tgttctcctggaaattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttagttgaatgggccaagccattactcaacagc |
215 |
Q |
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| T |
30412106 |
tgttctcctggaaattatgtcaggcaaacgtgcagtggataaaaacatgccgcttcaggaacaaaatttggttgaatgggccaagccattactcaacaac |
30412205 |
T |
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| Q |
216 |
aaacataaaatctctcaagttatggatgttcgtatagaaggtg |
258 |
Q |
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| T |
30412206 |
aaacataaaatctctcaagttatggatgttcgtatagaaggtg |
30412248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 65 - 256
Target Start/End: Original strand, 30423209 - 30423400
Alignment:
| Q |
65 |
tttttgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttctcctggaaattatgtcaggcaaacgtgcagtggataaaaacatg |
164 |
Q |
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| T |
30423209 |
tttttgtgaaggtcacctaactaaaaagagcgatgtctacagtttcggggttgttctcctagaaattatgtcaggcaagcgtgtattggataaaaaccga |
30423308 |
T |
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| Q |
165 |
ccgcttcaggaacaaaatttagttgaatgggccaagccattactcaacagcaaacataaaatctctcaagttatggatgttcgtatagaagg |
256 |
Q |
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| T |
30423309 |
ccgtctggagagcatgatttagttgcatgggccaagccattactcatgagcaaacgtaagatttctcaagttatggatgctcgtatagaagg |
30423400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 30409522 - 30409663
Alignment:
| Q |
22 |
cataatacctacaattttactcctaacctttttctcattgtcatttt-tgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttc |
120 |
Q |
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||||| || |||||||||||| |||| ||||||| ||||| | |||| ||||||| | ||||||| || ||||||||| ||||||||||||||||||||| |
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| T |
30409522 |
cataaaacttacaattttacttctaatctttttcccattgcctttttttgtgaaggtcacctaactaaagagagtgatttatacaattttggggttgttc |
30409621 |
T |
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| Q |
121 |
tcctggaaattatgtcaggcaaacgtgcagtggataaaaaca |
162 |
Q |
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| T |
30409622 |
tcttggaaattatgtcaggcaaacatgcattagataacaaca |
30409663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 155
Target Start/End: Original strand, 30405417 - 30405545
Alignment:
| Q |
28 |
acctacaattttactcctaacct-ttttctcattgtcatttttgtgaagattacctaaccaaggagagtgatgtatacaattttggggttgttctcctgg |
126 |
Q |
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| T |
30405417 |
acctacaattttattcctaacatcttttcgaattgtcttttttgtgaaggtcacttgaccaaaaagagtgatgtatacggttttggggttgttctcctgg |
30405516 |
T |
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| Q |
127 |
aaattatgtcaggcaaacgtgcagtggat |
155 |
Q |
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| T |
30405517 |
aaattatgtcgggaaaacgtgcattggat |
30405545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 30402395 - 30402453
Alignment:
| Q |
91 |
agagtgatgtatacaattttggggttgttctcctggaaattatgtcaggcaaacgtgca |
149 |
Q |
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| T |
30402395 |
agagtgatatatacggttttggggttcttctcctggaaattatgtcaggaaaacgtgca |
30402453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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