View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_3 (Length: 541)
Name: NF20424_low_3
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 16 - 530
Target Start/End: Complemental strand, 35535937 - 35535421
Alignment:
| Q |
16 |
aatactactaggttggatggagaacctagcattgctgtagcaactcggtcttttctggttctaactaatactacgcctgggaagttgtacagcgtattag |
115 |
Q |
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||||||||||| |||| |||||||||||||||| ||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||| ||||| |
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| T |
35535937 |
aatactactagattggttggagaacctagcatttctgtagcaactcggtcttttcctgttctatctaatacaactcctgggaagttgtacagcgcattag |
35535838 |
T |
|
| Q |
116 |
ttgttaccagttagtgttttcacatttttgataaatcctatgaattcattgatagtccaccaattctacatacacgtagtacaatatcttttggtattgt |
215 |
Q |
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||||||||||| || ||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
35535837 |
ttgttaccagtaagcgttttcacatttttgataattcccatgaactcattgatagtccaccaattctacaaacacgcagtacaatatcttttggtattgc |
35535738 |
T |
|
| Q |
216 |
actctagtatgaggaatgaaaaaccatttatatctctatataaaatt--gagattgaactatgattggcaggaaacatagagtttgtcgatgacataatg |
313 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35535737 |
actctagtatgaggaatgaaaagccatttatatctctatataaaattctgagattgaactatgattggcaggaaacatagagtttgttgatgacataatg |
35535638 |
T |
|
| Q |
314 |
acatttgaggagcttggcattttcctgaaatcccgtggatgtcatgtggctatgctttcatcaatggagttttcattgaaaaatggaattgctggttgct |
413 |
Q |
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|||||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35535637 |
acatttgaagagcttggcatattcttgaaatcccatggatgtcatgtggctatgctttcatcaatggagttttcgttgaaaaatggaattgctggttgct |
35535538 |
T |
|
| Q |
414 |
tgaaagctttattgcgagagtttctagggaattctttcgatgtgggtgcttctatgaacttattatgtataattaaattaaatctatctactgccactgt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35535537 |
tgaaagctttattgcgagagtttctagggaattctttcgatgtgggtgcttctatgaacttattatgtataattaaattaaatctatctactgctactgt |
35535438 |
T |
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| Q |
514 |
ctcctttacttattcat |
530 |
Q |
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||||||||||||||||| |
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| T |
35535437 |
ctcctttacttattcat |
35535421 |
T |
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