View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20424_low_35 (Length: 267)
Name: NF20424_low_35
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_35 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 26517067 - 26517311
Alignment:
| Q |
10 |
ataattctaactttattatttcgaggactaaaatgctgatttattcttcgcgtatctaaccactatctatctaattataggaatcagggaaagaaaaatg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26517067 |
ataattctaactttattatttcgaggactaaaatgctgatttattcttcgcgtatctaaccactatctatctaattataggaatcagggaaagaaaaatg |
26517166 |
T |
|
| Q |
110 |
gattggcctgaaagactaagagtggcattaggagctgcaaaagggcttgcttatctccactcaagttcttgtgttggaattcctattgttcatagagatt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26517167 |
gattggcctgaaagactaagagtggcattaggagctgcaaaagggcttgcttatcttcactcaagttcttgtgttggaattcctattgttcatagagatt |
26517266 |
T |
|
| Q |
210 |
tcaaatccaccaatgttcttttagatgccaattttgaagcaaagg |
254 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
26517267 |
tcaaatccaccaatgttcttttagattccaattttgaagcaaagg |
26517311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 80 - 254
Target Start/End: Original strand, 15243415 - 15243589
Alignment:
| Q |
80 |
ctaattataggaatcagggaaagaaaaatggattggcctgaaagactaagagtggcattaggagctgcaaaagggcttgcttatctccactcaagttctt |
179 |
Q |
| |
|
|||||| ||||||| | |||||||| |||||||||||| ||||||| |||||| | |||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
15243415 |
ctaattttaggaattggagaaagaaacatggattggcctcgaagactacaggtggcactgggagctgcaaaaggacttgcttatctccattcaagttctg |
15243514 |
T |
|
| Q |
180 |
gtgttggaattcctattgttcatagagatttcaaatccaccaatgttcttttagatgccaattttgaagcaaagg |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
15243515 |
atgttggaattcctattgttcatagagatttcaaatcgaccaacattctcatagatgccaactttgaagcaaagg |
15243589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University