View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_38 (Length: 255)
Name: NF20424_low_38
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 24639601 - 24639829
Alignment:
| Q |
17 |
atttcagacagaggattcttactcatttatcttcacagtaagtcat-tgttattccttcactaaacttaagagttttattattttgacatgcaaatttga |
115 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639601 |
atttcagacagaggattcttactcatttatctttacagtaagtcatatgttattccttcactaaacttaagagttttattattttgacatgcaaatttga |
24639700 |
T |
|
| Q |
116 |
caacgatttagatggttaatgaagtttaaactgatgacaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagccacaaattgtgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24639701 |
caacgatttagatggttaatgaagtttaaactgatgtcaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagccacaaattgtgc |
24639800 |
T |
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| Q |
216 |
tcattggtttggttgatttgagctttcat |
244 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
24639801 |
tcattggtttggttgatttgagctttcat |
24639829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 244
Target Start/End: Complemental strand, 52491165 - 52490937
Alignment:
| Q |
17 |
atttcagacagaggattcttactcatttatcttcacagtaagtcat-tgttattccttcactaaacttaagagttttattattttgacatgcaaatttga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491165 |
atttcagacagaggattcttactcatttatctttacagtaagtcatatgttattccttcactaaacttaagagttttattattttgacatgcaaatttga |
52491066 |
T |
|
| Q |
116 |
caacgatttagatggttaatgaagtttaaactgatgacaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagccacaaattgtgc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52491065 |
caacgatttagatggttaatgaagtttaaactgatgtcaatgtgttgtaaataattaactatcactgaacttaataacttctaaaagccacaaattgtgc |
52490966 |
T |
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| Q |
216 |
tcattggtttggttgatttgagctttcat |
244 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
52490965 |
tcattggtttggttgatttgagctttcat |
52490937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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