View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_4 (Length: 531)
Name: NF20424_low_4
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 9 - 516
Target Start/End: Original strand, 56282377 - 56282878
Alignment:
| Q |
9 |
gaaatgaacctgaccttcgttttgatatctcaactccattatcaaaagtgagcactttccattcatcattgtttgagtttactctgtttgtgtccgaagc |
108 |
Q |
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| T |
56282377 |
gaaatgaacctgaccttcgttttgatatctcaactccattatcaaaagtgagcactttccattcatcattgtttgagtttcctctgtttgtgtccgaagc |
56282476 |
T |
|
| Q |
109 |
tgctagtaactcttgtatgcaactttcacttgcaaactgtacataccttttaagagagtcctcactaattgacctttacaagaagaaattcatcatcatc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
56282477 |
tgctagtaactcttgtatgcaactttcacttgcaaactgtacataccttttaagagagtcctcactaattgacctttaaaagaagaaattcatcatcatc |
56282576 |
T |
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| Q |
209 |
acttcaacaattatatatgaaaacaaacatttaattgattgaaatggttggtatttaatttagcactcaccaagatcggctgcaaggtacagttctcctg |
308 |
Q |
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| T |
56282577 |
acttcaacaattatatatgaacac-aacatttaattgattgaaatggttgatatttaatttagcactcaccaagatcggctgcaaggtacagttctcctg |
56282675 |
T |
|
| Q |
309 |
ctcattgtggctggttttcttttatgagatttaagactattgataaatgaaaggcnnnnnnnnnnnnnnnnncaaaaagtggtaaggattatgtgatgat |
408 |
Q |
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| T |
56282676 |
ctcattgtggctggttttcttttatgagatttaagactattgataaatgaaaggc--atatatatatatatacaaaaagtggtaagggttatgtgatgat |
56282773 |
T |
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| Q |
409 |
gcatagtttaaaagagaggctaagaagtgccaagaagaggtgattgctgcacatgcaatgacagaagaaccttacattattagaagaagaatagccttct |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
56282774 |
gcatagtttaaaagagaggctaagaagtgccaagaagaggtgattgctgcacatgcaatgacagaagaaccttacattatt---agaagaatagccttct |
56282870 |
T |
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| Q |
509 |
ctctcttt |
516 |
Q |
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|||||||| |
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| T |
56282871 |
ctctcttt |
56282878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 38476865 - 38476927
Alignment:
| Q |
22 |
ccttcgttttgatatctcaactccattatcaaaa--gtgagcactttccattcatcattgttt |
82 |
Q |
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|||| |||||||||||||||||| |||||||||| |||| ||||||||||| |||||||||| |
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| T |
38476865 |
cctttgttttgatatctcaactcaattatcaaaagtgtgaccactttccattaatcattgttt |
38476927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 34572132 - 34572209
Alignment:
| Q |
80 |
tttgagtttactctgtttgtgtccgaagctgctagtaactcttgtatgcaactttcacttgcaaactgtacatacctt |
157 |
Q |
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|||| |||| ||||||||||||| ||||| ||| |||||||||||||||| |||| | || ||||| ||||||||| |
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| T |
34572132 |
tttgtgtttcctctgtttgtgtcataagcttctaataactcttgtatgcaatattcagtcgcgaactgcacatacctt |
34572209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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