View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20424_low_43 (Length: 245)
Name: NF20424_low_43
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_43 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 33442772 - 33442537
Alignment:
| Q |
25 |
ttgctatatttatctacgagaagcaacatatgaacaagagaaggttcaagcctcatggctattgcaaaagttggaactatta----------------tt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| || |
|
|
| T |
33442772 |
ttgctatatttatctacgagaagcaacatatgaacaagagaaggttcaagcttcatggctattgcaaaaattgaaactattaccgtacctcaacattatt |
33442673 |
T |
|
| Q |
109 |
tacaattacaatattacgttatttcttatcttagtctgaatacgatattataatttgtagttaaatcaaattaatattcaaattcttgtaaccnnnnnnn |
208 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33442672 |
tccaattacaatattacgttatttcttatcttagtctaaatacgatattataatttgtagttaaatcaaattaatattcaaattcttgtaacc-aaaaaa |
33442574 |
T |
|
| Q |
209 |
ntaaattaatattcaaattctgccaagccgtccttag |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
33442573 |
ataaattaatattcaaattctgccaagccgtccttag |
33442537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 33452880 - 33452811
Alignment:
| Q |
123 |
tacgttatttcttatcttagtctgaatacgatattataatttgtagttaaatcaaattaatattcaaattct |
194 |
Q |
| |
|
|||||||||||||||| |||||| || | |||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
33452880 |
tacgttatttcttatca-agtctgcatgcaatattata-tttgtggttaaatcaaattaatattcaaattct |
33452811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 241
Target Start/End: Complemental strand, 33452829 - 33452799
Alignment:
| Q |
211 |
aaattaatattcaaattctgccaagccgtcc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
33452829 |
aaattaatattcaaattctgccaagccgtcc |
33452799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University