View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_45 (Length: 228)
Name: NF20424_low_45
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 33442252 - 33442469
Alignment:
| Q |
7 |
cttactgagtgtgtccccgagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatct |
106 |
Q |
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| T |
33442252 |
cttactgagtgtgtccccgagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatct |
33442351 |
T |
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| Q |
107 |
tttgccacagccatggttgagaagatagtagcaatgagagcaaagaggaaaagagcacgagaaagagccatgtatgaagtactagtattgctctttcttt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
33442352 |
tttgccacagccatggttgagaagatagtagcaatgaaagcaaagaggaaaagagcacgagaaagagccatagttgaagtactagtattgctctttcttt |
33442451 |
T |
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| Q |
207 |
gtttaatttggttactta |
224 |
Q |
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||||||||| |||||||| |
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| T |
33442452 |
gtttaattttgttactta |
33442469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 33452502 - 33452718
Alignment:
| Q |
7 |
cttactgagtgtgtccccgagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatct |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33452502 |
cttactgagtgtgtccccgagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatctccaactacaaaatct |
33452601 |
T |
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| Q |
107 |
tttgccacagccatggttgagaagatagtagcaatgagagcaaagaggaaaagagcacgagaaagagccatgtatgaagtactagtattgctctttcttt |
206 |
Q |
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| T |
33452602 |
tttgccacggccatggttgagaagatggaagcaatgagagcaaagagaaaaagagcacgagaaagagccatgtatgaagtactagtattgctctttcttt |
33452701 |
T |
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| Q |
207 |
gtttaatttggttactt |
223 |
Q |
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||||||||||||||||| |
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| T |
33452702 |
gtttaatttggttactt |
33452718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 33400038 - 33400207
Alignment:
| Q |
8 |
ttactgagtgtgtccccgagacgaaagaccttgtttgcggtccaagtttggtaatcaaaca-aagtagtccaacccttttcatcaccaactacaaaatct |
106 |
Q |
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|||||||||||||| ||||||||||||||||||||||| | ||||| ||||||||||| | |||| |||||||| ||||||| ||||||||||||||| |
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| T |
33400038 |
ttactgagtgtgtctccgagacgaaagaccttgtttgcagcccaagcttggtaatcaaccccaagt-gtccaaccactttcatctccaactacaaaatct |
33400136 |
T |
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| Q |
107 |
tttgccacagccatggttgagaagatagtagcaatgagagcaaagaggaaaagagcacgagaaagagccat |
177 |
Q |
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| T |
33400137 |
tttgccacagccatggttgagaagatagtagcaatgagagcaaagaggaaaagagaacgagaaagagccat |
33400207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 177
Target Start/End: Original strand, 33396952 - 33397122
Alignment:
| Q |
7 |
cttactgagtgtgtccccgagacgaaagaccttgtttgcggtccaagtttggtaatcaaacaaagtagtccaacccttttcatcaccaactacaaaatct |
106 |
Q |
| |
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|||||||||||||||||| | ||||||||| |||||||| | |||| ||| ||||||| | ||||||| |||||| ||||||||||||||| |
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| T |
33396952 |
cttactgagtgtgtcccctacacgaaagactttgtttgcagcccaatattgataatcaacccctaatttccaaccacgttcatctccaactacaaaatct |
33397051 |
T |
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| Q |
107 |
tttgccacagccatggttgagaagatagtagcaatgagagcaaagaggaaaagagcacgagaaagagccat |
177 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
33397052 |
tttgccacagccatggttgaaaagatagtagcaatgagagcaaagagaaaaagaacacgagaaagagccat |
33397122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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