View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_47 (Length: 224)
Name: NF20424_low_47
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 52771152 - 52771340
Alignment:
| Q |
14 |
cacagacaagagaaccaaagatgtaaacactcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagtt |
113 |
Q |
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| T |
52771152 |
cacagacaagagaaccaaagatgtaaacactcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagtt |
52771251 |
T |
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| Q |
114 |
ccgacagcattcattgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggact |
202 |
Q |
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| T |
52771252 |
ccgacagcattcattgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggact |
52771340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 52767225 - 52767385
Alignment:
| Q |
42 |
actcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagttccgacagcattcattgcagcaacaaaga |
141 |
Q |
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||||||||||||||| | || |||||| | |||| |||||||| ||||| ||||||||||||||||| |||||| ||||||||| ||||||| | || |
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| T |
52767225 |
actcctcctaagctatacagggctaattttttccgtcctgcatggtcaataaggtaaataccaagaactgttccggcagcattcaagccagcaactatga |
52767324 |
T |
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| Q |
142 |
gtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggact |
202 |
Q |
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| T |
52767325 |
gagagagttgaagagccaactcattagagtgaaagccagccatttggacaattgttggact |
52767385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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