View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20424_low_5 (Length: 521)
Name: NF20424_low_5
Description: NF20424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20424_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 502
Target Start/End: Original strand, 35668517 - 35669019
Alignment:
| Q |
1 |
acaagcaacactaaagttggctgctactcttcttaagcaaatccatcaagaaaaagggaattgagaaatgccaggatatcagctgttgctttcctagctt |
100 |
Q |
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| T |
35668517 |
acaagcaacactaaagttggctgctactcttcttaagcaaatccatcaagaaaaagggaattgagaaatgccaggatatcagctgttgctttcctagctt |
35668616 |
T |
|
| Q |
101 |
gatgtcttgacttttgaagctctaaaacaaggataaatgattttcattacaatgtttagattcacaactaatactgtggttttttaagcaaggagatttc |
200 |
Q |
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| T |
35668617 |
gatgtcttgacttttgaagctctaaaacaaggataaatgattttcattacaatgtttagattcacaactaatactgtggttttttaagcaaggagatttc |
35668716 |
T |
|
| Q |
201 |
ttgtaaaaatgcggtcctttgtttttcacaatcagttcttgctccatatacagtgtcatttcagttgtttgggaaagttcataaaagtcggataagatat |
300 |
Q |
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| T |
35668717 |
ttgtaaaaatgcggtactttgtttttcacaatcagttcttgctccatatacagtgtcatttcagttgtttgggaaagttcataaaagtcggataagatat |
35668816 |
T |
|
| Q |
301 |
tgaatgaaaactagttaatggtaagtaatttaataatgtcatactagtcaatcattcaccataagttgatgcacccattctcattgcagaagttctctct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35668817 |
tgaatgaaaactagttaatggtaagtaatttaataatgtcatactagtcaatcattcaccataagttgatgcacccatgctcattgcagaagttctctct |
35668916 |
T |
|
| Q |
401 |
aggggcaatatttgggtttgatttttcaatatgtttttctttttag-ttggtaataactagtatattccaatttccagcaatccgttgcattagagacac |
499 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
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| T |
35668917 |
aggggcaatatttgggtttgatttttcaatatgtttctctttttagtttggtaataactagtatattccgatttccagcagtccattgcattagagacac |
35669016 |
T |
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| Q |
500 |
tgc |
502 |
Q |
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| T |
35669017 |
tgc |
35669019 |
T |
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