View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20425_high_18 (Length: 316)
Name: NF20425_high_18
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 45543074 - 45542776
Alignment:
| Q |
1 |
ctagtgaagaagataaggcactttctgaggtgatttcagaagctttacataaagggaaagaagagccattgaaaaaagaagatggaatattggctagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45543074 |
ctagtgaagaagataaggcactttctgaggtggtttcagaagctttacataaagggaaagaagagccattgaaaaaagaagatggaatattggctagtga |
45542975 |
T |
|
| Q |
101 |
ggatgagaagtcagagaaagttcttgaagagagcaatgcgaatagtccaggcaaaggaatggttgacagggttaaggattattatggatcttggtttgct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45542974 |
ggatgagaagtcagagaaagttcttgaagagagcaatgcgaatagttcaggaaaaggaatggttgacagggttaaggattattatggatcttggtttgct |
45542875 |
T |
|
| Q |
201 |
aaacctgaggagaatcaatcaccacagggtaattctttttctctagtacattttgcataatgttgtgttatataatatatttgatatgattctgatttt |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45542874 |
aaacctgaggagaatcaatcaccacagggtaattctttttctctagtacattttgcataatgttgtgttatataatatatttgatatgattctgatttt |
45542776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 45530183 - 45529884
Alignment:
| Q |
1 |
ctagtgaagaagataaggcactttctgaggtgatttcagaagctttacataaagggaaagaagagccattgaaaaaagaagatggaatattggctagtga |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||| |||||||||| |||||| |||||||||||||||||||| |
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| T |
45530183 |
ctagtgaagaagataaggcactttcttaggtgattttagaagctttacatgaagggaaagacgagccattgacaaaagaggatggaatattggctagtga |
45530084 |
T |
|
| Q |
101 |
ggatgagaagtcagagaaagttcttgaagagagcaatgcgaatagtccaggcaaaggaatggttgacagggttaaggattattatggatcttggtttgct |
200 |
Q |
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| T |
45530083 |
ggatgagaagtcaaagaaagtttttgaagagagcaatgtgactagtccaagaaaaggcatggttgacagggttaagaattattatggatcttggtttgct |
45529984 |
T |
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| Q |
201 |
aaacctgaggagaatcaatcaccacagggtaattctttttctctagtacattttgcataatg-ttgtgttatataatatatttgatatgattctgatttt |
299 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||| |
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| T |
45529983 |
aaacctgaggagaatcaatcacaacagggtaattctttttctctagtacattttgcataatgtttgtgttacataatatatatgatatgattctaatttt |
45529884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 45548396 - 45548218
Alignment:
| Q |
1 |
ctagtgaagaagataaggcactttctgaggtgatttcagaagctttacataaagggaaagaagagccattgaaaaaagaagatggaatattggctagtga |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||| |||| |||||| |
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| T |
45548396 |
ctagtgaagaagataaggcactttctgaggtgatttcagaaactttgaataaaggaaaagaagagccattgaaaaaagaggatggaaagttggatagtga |
45548297 |
T |
|
| Q |
101 |
ggatgagaagtcagagaaagttcttgaagagagcaatgcgaatagtccaggcaaaggaatggttgacagggttaaggat |
179 |
Q |
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|| ||||||||| || ||||| ||||||||||||||| |||||||||||| ||||| |||||||||| |||||||||| |
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| T |
45548296 |
ggttgagaagtctgacaaagtgtttgaagagagcaatgtgaatagtccaggaaaaggcatggttgacaaggttaaggat |
45548218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 7005814 - 7005947
Alignment:
| Q |
1 |
ctagtgaagaagataaggcactttctgaggtgatttcagaagctttacataaagggaaagaagagccattgaaaaaagaagatggaatattggctagtga |
100 |
Q |
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||||||||||||| || ||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| |||||| |
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| T |
7005814 |
ctagtgaagaagacaatgcactctctaaggtgatttcagaagcttttcataaagggaaagaagagcctttgaaaaaagaggatggaaaattgggtagtga |
7005913 |
T |
|
| Q |
101 |
ggatgagaagtcagagaaagttcttgaagagagc |
134 |
Q |
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| ||||||||||||||||||| |||||||||| |
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| T |
7005914 |
gaatgagaagtcagagaaagtgtgtgaagagagc |
7005947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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