View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20425_high_2 (Length: 902)
Name: NF20425_high_2
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_high_2 |
 | |
|
| [»] scaffold0206 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 692; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 107 - 887
Target Start/End: Original strand, 3476671 - 3477451
Alignment:
| Q |
107 |
cctatcttggttggtggctatgcttgaaacgatttcaaggaattttggtgttagattatattagaactcttgtattttgtactttattttaataagttag |
206 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3476671 |
cctatcttggttggtggctatccttgaaacaatttcaaggaattttggtgttagattatattagaactcttgtattttgtactttattttaataagttag |
3476770 |
T |
|
| Q |
207 |
gttaatttggtatatgaatacgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttgtattagtttctatctatacta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3476771 |
gttaatttggtatatgaatacgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttgtattagtttctatctatacta |
3476870 |
T |
|
| Q |
307 |
ttcatattcatagaatgttattgtatttatttaagtatcatgacttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaattgaagttta |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3476871 |
ttcatattcatagaatgttattgtatttatttgagtatcatggcttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaattgaagttta |
3476970 |
T |
|
| Q |
407 |
ttgtagttgtttgtttgatgggttttttgatttgatgataataaccggcaacacaaaactctacatgttactagttttgctgtgtaacgtaagtgtgagt |
506 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
3476971 |
ttgtagttgtttgtttgatggggtttttgatttgatgataataactggcaacacaaaactctacatgttactagttttgttgtgtaacgtaagtttgagt |
3477070 |
T |
|
| Q |
507 |
gagtgtatgtttggatgagcaataagtttggcaaaattattgtagcaccatgattttgttgaagctacaaagtgcagtttttataaaaaatcacacaggc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3477071 |
gagtgtatgtttggatgagcaataagtttggcaaaattattgtagcaccatgattttgttgaagctacaaagtgtagtttttataaaaaatcacacaggc |
3477170 |
T |
|
| Q |
607 |
ttagaaaatcacacaggctcaccgtattatgacaaatttaattactgtcaatccaaacatttatcaagtannnnnnnagtattgtggttgttgataagtg |
706 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
3477171 |
ttaaaaaatcacacaggctcaccgtattatgacaaatttaattactgtcaatccaaacagttatcaagtatttttttagtattgtggttgttgataagtg |
3477270 |
T |
|
| Q |
707 |
acatgatgataagattagattaactagagtttgtgagttggtggatgattaagattgctggaaattgcatgagattcatgggaatctttctaccatcttt |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3477271 |
acatgatgataagattagattaactagagtttgtgagttggtgaatgattaaggttgctggaaattgcatgagattcatgggaatctttctaccatcttg |
3477370 |
T |
|
| Q |
807 |
gtgaattgaatctgtcacacatttctctgattgatgatgatgataatgacagggaagactagtggagttgaacttctttgt |
887 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3477371 |
gtgaattgaatttgtcacacatttctccgattgatgatgatgataatgatagggaagactagtggagttgaacttctttgt |
3477451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 3476570 - 3476613
Alignment:
| Q |
6 |
aggaggagcagagagcttgtgttgatgggttgcaaggtttggat |
49 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
3476570 |
aggaggagccgggagcttgtgttgatgggttgcaaggtttggat |
3476613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206 (Bit Score: 544; Significance: 0; HSPs: 2)
Name: scaffold0206
Description:
Target: scaffold0206; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 107 - 887
Target Start/End: Original strand, 16016 - 16785
Alignment:
| Q |
107 |
cctatcttggttggtggctatgcttgaaacgatttcaaggaattttggtgttagattatattagaactcttgtattttgtactttattttaataagttag |
206 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
16016 |
cctatcttcgttggtggctatgcttgaaacgatttcaaggaattttggtgttagattatattagaactcttgttttttgtactctattttaataagttag |
16115 |
T |
|
| Q |
207 |
gttaatttggtatatgaatacgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttg-----tattagtttctatcta |
301 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
16116 |
gttaatttggtgtatgaattcgtaaaatctttatgcttgtattgtactactatgtatgtatataaagtttgttgttttgtattatattagtttctatcta |
16215 |
T |
|
| Q |
302 |
tactattcatattcatagaa---tgttattgtatttatttaagtatcatgacttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaatt |
398 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16216 |
tactattcatattcatagaatgttgttattgtatttatttgagtatcatggcttgttaggaaattgttaattgttgaagtttagcagtaccttgtgaatt |
16315 |
T |
|
| Q |
399 |
gaagtttattgtagttgtttgtttgatgggttttttgatttgatgataataaccggcaacacaaaactctacatgttactagttttgctgtgtaacgt-- |
496 |
Q |
| |
|
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
16316 |
gaggtttattgtagttgtttgtttgatggggtttttgatttgatgataataacttgcaacacaaaactctacatgttactagttttgttgtgtaacgtgc |
16415 |
T |
|
| Q |
497 |
aagtgtgagtgagtgtatgtttggatgagcaataagtttggcaaaattattgtagcaccatgattttgttgaagctacaaagtgcagtttttataaaaaa |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
16416 |
aagtgtgagtgagtgtatgtttggatgagcaataagtttggcaaaattattgtagccccataattttgttgaagctacaaagtgtagtttttataa---- |
16511 |
T |
|
| Q |
597 |
tcacacaggcttagaaaatcacacaggctcaccgtattatgacaaatttaattactgtcaatccaaacatttatcaagtannnnnnnagtattgtggttg |
696 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16512 |
--------------aatatcacacatgctcaccgtattatgacaaatttaattactgtcaatccaaacatttatcaagtattttttgagtattgtggttg |
16597 |
T |
|
| Q |
697 |
ttgataagtgacatgatgataagattagattaactagagtttgtgagttggtggatgattaagattgctggaaattgcatgagattcatgggaatctttc |
796 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16598 |
ttgataagtgacacgatgatgagattagattaactagagtttctgagttgttgaatgattaaggttgctggaaattgcatgagattcatgggaatctttc |
16697 |
T |
|
| Q |
797 |
taccatctttgtgaattgaatctgtcacacatttctctgattgatgatgatgataatgacagggaagactagtggagttgaacttctttgt |
887 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16698 |
taccctctttgtgaattgaatttgtcacacatttctccgattgatgatgatg---atgatagggaagactagtggagttgaacttctttgt |
16785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0206; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 15918 - 15958
Alignment:
| Q |
9 |
aggagcagagagcttgtgttgatgggttgcaaggtttggat |
49 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
15918 |
aggagccgggagcttgtgttgatgggttgcaaggtttggat |
15958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 551 - 588
Target Start/End: Complemental strand, 50230033 - 50229996
Alignment:
| Q |
551 |
gcaccatgattttgttgaagctacaaagtgcagttttt |
588 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
50230033 |
gcactatgattttgttgaagctacaaagtgtagttttt |
50229996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University