View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20425_high_9 (Length: 411)
Name: NF20425_high_9
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 31931547 - 31931930
Alignment:
| Q |
16 |
ctatgaatttatttaccccttgatcaaaatggataacatttatatctactcattagttttgtactggctttatgtgggtttatttatatgcaaaatatta |
115 |
Q |
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| T |
31931547 |
ctatgaatttatttaccccttgatcaaaatggataatatctatatctactcattagttttgtactggctttatgtgggtttatttatatgcaaaatatta |
31931646 |
T |
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| Q |
116 |
tgggtgtttgtcactaaatttcagcatttttcattatattcaaatgatcatgatcattatctttcctctgagttatgtttatccaattgattgtctacat |
215 |
Q |
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| T |
31931647 |
tgggtgtttgtccctaaatttcaacatttttcattatattcaa------atgatcattatcttttctctgagttatgtttatccaattgattgtctacat |
31931740 |
T |
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| Q |
216 |
aatagtgcaagtttaagggtgattggcccattgaatctttgannnnnnnnnnnnnnccacttttctttattggatttcaacatcacttgaaattatttat |
315 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31931741 |
aatagtgcaagtttaagggtgactggcccattgaatctttgcttttttttgtttttccacttttctttattggatttcaacatcacttgaaattatttat |
31931840 |
T |
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| Q |
316 |
ttaaggctcaattgaaattgtaacgttgatcttcctattcttatggaattggtcaatcctttttaaaatttagtttaattttcttctctc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31931841 |
ttaaggctcaattgaaattgtaacgttgatcttcctattcttatggaattggtcaatcctttttaaaatttagtttaattttcttctctc |
31931930 |
T |
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