View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20425_low_1 (Length: 1017)

Name: NF20425_low_1
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20425_low_1
NF20425_low_1
[»] chr3 (6 HSPs)
chr3 (13-624)||(53699288-53699900)
chr3 (630-738)||(33281712-33281821)
chr3 (656-742)||(39114956-39115041)
chr3 (652-744)||(32708723-32708816)
chr3 (647-738)||(35989100-35989191)
chr3 (687-738)||(49183719-49183770)
[»] chr4 (2 HSPs)
chr4 (686-744)||(48417600-48417658)
chr4 (649-744)||(42777290-42777384)
[»] chr5 (5 HSPs)
chr5 (687-738)||(3676511-3676562)
chr5 (690-742)||(9096346-9096398)
chr5 (652-738)||(19389824-19389910)
chr5 (687-745)||(32125262-32125320)
chr5 (686-742)||(37909024-37909080)
[»] scaffold0036 (1 HSPs)
scaffold0036 (638-742)||(82770-82875)
[»] chr2 (1 HSPs)
chr2 (687-738)||(15803212-15803263)
[»] chr6 (2 HSPs)
chr6 (633-738)||(26713832-26713938)
chr6 (627-667)||(6695269-6695309)
[»] chr7 (4 HSPs)
chr7 (633-742)||(30183817-30183925)
chr7 (652-711)||(23419496-23419556)
chr7 (686-738)||(38137964-38138016)
chr7 (688-738)||(38505340-38505390)
[»] chr8 (5 HSPs)
chr8 (687-738)||(16424171-16424223)
chr8 (643-738)||(31305781-31305876)
chr8 (687-738)||(39778838-39778889)
chr8 (687-738)||(41866123-41866174)
chr8 (687-744)||(6943456-6943513)
[»] scaffold0263 (1 HSPs)
scaffold0263 (687-738)||(12255-12306)
[»] scaffold0002 (1 HSPs)
scaffold0002 (687-738)||(90881-90932)
[»] chr1 (2 HSPs)
chr1 (688-738)||(50587069-50587119)
chr1 (686-743)||(35604257-35604314)


Alignment Details
Target: chr3 (Bit Score: 585; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 13 - 624
Target Start/End: Original strand, 53699288 - 53699900
Alignment:
Q  13 cagagaccattcagccataagcttgaatatgccaaattgaaaagatgcaaatcaaagaaatgagttcaaacatctttccaccataagcttgaataggcca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53699288 cagagaccattcagccataagcttgaatatgccaaattgaaaagatgcaaatcaaagaaatgagttcaaacatctttccaccataagcttgaataggcca 53699387  T
Q  113 attcaaataaatctttcaaggtaggaggatattgataaaatgaccgcttcaatatatt-attaactgttgttgttcgagaaagtctttgataatttgtgg 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53699388 attcaaataaatctttcaaggtaggaggatattgataaaatgaccgcttcaatatatttattaactgttgttgttcgagaaagtctttgataatttgtgg 53699487  T
Q  212 cagaaaagaatagtagtggtaaatttagccatatatatttgaattaaaacccaagatgtttgttatatgaaatctaagttcattttaattctaaacaaac 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53699488 cagaaaagaatagtagtggtaaatttagccatatatatttgaattaaaacccaagatgtttgttatatgcaatctaagttcattttaattctaaacaaac 53699587  T
Q  312 tgaatacttgaaaggtcctcttaacggtaacagcaaaactttgcatgcaagtattgttactaaacatgtttgcaaaactaatttcacgtatatggtgttg 411  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53699588 tgaatacttgaaaggtcctcttaacagtaacagcaaaactttgcatgcaagtattgttactaaacatgtttgcaaaactaatttcacgtatatggtgttg 53699687  T
Q  412 ctactcccacaaactaatttttgtgaacaacaatttatatcgtgacgttataaaacaatttgtgaaacgtttaattttatatgacggtgagtgtgtgtta 511  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  53699688 ctactcccacaaactaatttttgtgaacaacaatttatatcgtgacgttataaaacaatttgtgaaacgtttaattttatatgacggtgagtttgtgtta 53699787  T
Q  512 cattagttagatattagctaagtttggagtgaacaaaatatgactctaggctttctttgcgagtatggaaggtgaagggaggactttgaagaaaaggata 611  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  53699788 cattagttagatattagctaagtttggagtgaacaaaatatgactctaggctttctttgcgaatatggaaggtgaagggaggactttgaagaaaagaata 53699887  T
Q  612 gagaacttcgaga 624  Q
    |||||||||||||    
T  53699888 gagaacttcgaga 53699900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 630 - 738
Target Start/End: Complemental strand, 33281821 - 33281712
Alignment:
Q  630 gattttgaggggtttattatttttcataatataaaatcc-ccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaat 728  Q
    ||||||||||| |||||| |||||||||||||||||||| ||| | || | ||||  ||||||||||||| || |||||||||||  ||| || ||||||    
T  33281821 gattttgagggatttattttttttcataatataaaatcctcctcatttataggaactcaaaaattgtattggaagaggattttgaggggtttaaatgaat 33281722  T
Q  729 tcttcaaatt 738  Q
    ||||||||||    
T  33281721 tcttcaaatt 33281712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 656 - 742
Target Start/End: Complemental strand, 39115041 - 39114956
Alignment:
Q  656 taatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaat 742  Q
    ||||||||||||| | |||||||||| | ||  |||||||||| |||||||| |||  | ||| |||||||||||||||||||||||    
T  39115041 taatataaaatcctcctaattttgggga-actcaaattgtattggaggaggactttagagggtttatatgaattcttcaaattcaat 39114956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 652 - 744
Target Start/End: Original strand, 32708723 - 32708816
Alignment:
Q  652 ttcataatataaaatccccttaattttg-ggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaattt 744  Q
    ||||||||| ||||||| | |||||||| ||||| ||||| ||| ||  || |||||||||| ||||| |||||||||||||  ||||||||||    
T  32708723 ttcataatacaaaatcctcataattttgaggaattcaaaatttggatcagatgaggattttggaaggtttatatgaattcttttaattcaattt 32708816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 647 - 738
Target Start/End: Original strand, 35989100 - 35989191
Alignment:
Q  647 tatttttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    |||| |||||||||| ||| || | |||||| |||||   |||||||||||| ||||||  ||||||| | | |||||||||||||||||||    
T  35989100 tattcttcataatattaaaccctcctaatttggggaactaaaaaattgtattagaggagagttttgaaggatttatatgaattcttcaaatt 35989191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 738
Target Start/End: Original strand, 49183719 - 49183770
Alignment:
Q  687 aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    |||||||||||| ||||||| ||||| | ||| |||||||||||||||||||    
T  49183719 aaaaattgtattagaggagggttttggagggtttatatgaattcttcaaatt 49183770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 686 - 744
Target Start/End: Complemental strand, 48417658 - 48417600
Alignment:
Q  686 caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaattt 744  Q
    ||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  48417658 caaaaattgtattggaggaggattttggagggtctatatgaattcttcaaattcaattt 48417600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 649 - 744
Target Start/End: Complemental strand, 42777384 - 42777290
Alignment:
Q  649 tttttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaattt 744  Q
    |||||||||||| ||||||  | | ||||| | ||  ||||||||||||| ||||| | ||||||||||| || |||||||||||||||| |||||    
T  42777384 tttttcataatacaaaatcttcatcattttagaaactcaaaaattgtattggaggaag-ttttgaaaggtttacatgaattcttcaaatttaattt 42777290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 687 - 738
Target Start/End: Complemental strand, 3676562 - 3676511
Alignment:
Q  687 aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||||||||||    
T  3676562 aaaaattgtattggaggaggattttgaagggtttatatgaattcttcaaatt 3676511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 690 - 742
Target Start/End: Original strand, 9096346 - 9096398
Alignment:
Q  690 aattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaat 742  Q
    ||||||||| ||||||||||||| | ||| |||||||||||||||||||||||    
T  9096346 aattgtattggaggaggattttggagggtttatatgaattcttcaaattcaat 9096398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 652 - 738
Target Start/End: Complemental strand, 19389910 - 19389824
Alignment:
Q  652 ttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    ||||||||| ||||||| | | |||| |||||   |||||||||||| ||||||||||||| | ||| || ||||||||||||||||    
T  19389910 ttcataatacaaaatcctcctcatttggggaactaaaaaattgtattggaggaggattttggagggtttacatgaattcttcaaatt 19389824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 687 - 745
Target Start/End: Complemental strand, 32125320 - 32125262
Alignment:
Q  687 aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaatttg 745  Q
    |||||||||||| ||||||||||||  | ||| | ||||||||||||||||||||||||    
T  32125320 aaaaattgtattggaggaggattttagagggtttgtatgaattcttcaaattcaatttg 32125262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 686 - 742
Target Start/End: Original strand, 37909024 - 37909080
Alignment:
Q  686 caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaat 742  Q
    ||||| ||||||| ||||||| ||||| | ||| |||||||||||||||||||||||    
T  37909024 caaaagttgtattggaggagggttttggagggtttatatgaattcttcaaattcaat 37909080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 638 - 742
Target Start/End: Original strand, 82770 - 82875
Alignment:
Q  638 ggggtttattatttttcataatataaaatccccttaatttt-gggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaa 736  Q
    |||||||||| || ||||||||| ||||||| | ||||||  |||||  | ||||||||||| ||||| ||||||| | ||| |||||||| ||||||||    
T  82770 ggggtttatttttcttcataatacaaaatcctcctaatttgagggaactccaaaattgtattggaggatgattttggagggtttatatgaactcttcaaa 82869  T
Q  737 ttcaat 742  Q
    ||||||    
T  82870 ttcaat 82875  T

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Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 687 - 738
Target Start/End: Original strand, 15803212 - 15803263
Alignment:
Q  687 aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    |||||||||||| ||||||||||||| | ||| |||||||||||||||||||    
T  15803212 aaaaattgtattggaggaggattttggagggtttatatgaattcttcaaatt 15803263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 633 - 738
Target Start/End: Original strand, 26713832 - 26713938
Alignment:
Q  633 tttgaggggtttattatttttcataatat-aaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattct 731  Q
    ||||||||||| ||| || ||||| |||  ||||||| | | |||| |||||  ||||||||||||| ||||||| ||||| | ||| ||||||||||||    
T  26713832 tttgaggggttaatttttcttcatgataagaaaatcctcctcatttggggaactcaaaaattgtattggaggagggttttggagggtttatatgaattct 26713931  T
Q  732 tcaaatt 738  Q
    |||||||    
T  26713932 tcaaatt 26713938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 6695269 - 6695309
Alignment:
Q  627 gaggattttgaggggtttattatttttcataatataaaatc 667  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  6695269 gaggattttggggggtttattatttttcataatacaaaatc 6695309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 742
Target Start/End: Original strand, 30183817 - 30183925
Alignment:
Q  633 tttgaggggtttattatttttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattctt 732  Q
    ||||||||||| ||| || |||| |||| ||||||| | || ||||||| | || |||||||| || ||||||||||||| | | | | |||||||||||    
T  30183817 tttgaggggttcatttttcttcaaaatacaaaatcctcctagttttgggga-actaaaattgttttggaggaggattttggaggctttgtatgaattctt 30183915  T
Q  733 caaattcaat 742  Q
    ||||||||||    
T  30183916 caaattcaat 30183925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 652 - 711
Target Start/End: Complemental strand, 23419556 - 23419496
Alignment:
Q  652 ttcataatataaaatccccttaattttgggaa-tacaaaaattgtatttgaggaggatttt 711  Q
    ||||||||| | ||||||| |||||| ||||| || |||||||||||||||||||||||||    
T  23419556 ttcataatacacaatccccctaatttggggaactaaaaaaattgtatttgaggaggatttt 23419496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 686 - 738
Target Start/End: Original strand, 38137964 - 38138016
Alignment:
Q  686 caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    ||||| ||||||| ||||||| | ||| |||||||||||||||||||||||||    
T  38137964 caaaatttgtattggaggagggtattggaaggtctatatgaattcttcaaatt 38138016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 738
Target Start/End: Complemental strand, 38505390 - 38505340
Alignment:
Q  688 aaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    ||||||||||| ||||||| ||||| | ||| |||||||||||||||||||    
T  38505390 aaaattgtattggaggagggttttggagggtttatatgaattcttcaaatt 38505340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 687 - 738
Target Start/End: Original strand, 16424171 - 16424223
Alignment:
Q  687 aaaaattgtatttgaggaggattttga-aaggtctatatgaattcttcaaatt 738  Q
    |||||||||||| |||||||||||||| | ||| |||||||||||||||||||    
T  16424171 aaaaattgtattagaggaggattttgagagggtttatatgaattcttcaaatt 16424223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 738
Target Start/End: Complemental strand, 31305876 - 31305781
Alignment:
Q  643 ttattatttttcataatataaaatccccttaattttgggaatacaaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    ||||| || |||| ||| ||||| || |||||||| |||||   || ||||||||| ||| ||||||||| | ||| |||||||||||||||||||    
T  31305876 ttatttttcttcaaaatgtaaaaccctcttaatttggggaacgaaacaattgtattggagaaggattttggagggtttatatgaattcttcaaatt 31305781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 738
Target Start/End: Original strand, 39778838 - 39778889
Alignment:
Q  687 aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    |||||||||||| |||||| |||||| | ||| |||||||||||||||||||    
T  39778838 aaaaattgtattggaggagaattttggatggtttatatgaattcttcaaatt 39778889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 738
Target Start/End: Complemental strand, 41866174 - 41866123
Alignment:
Q  687 aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    |||||||||||| ||||||| ||||||| ||| ||||| |||||||||||||    
T  41866174 aaaaattgtattggaggagggttttgaagggtttatataaattcttcaaatt 41866123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 687 - 744
Target Start/End: Complemental strand, 6943513 - 6943456
Alignment:
Q  687 aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaattt 744  Q
    |||||||||||| ||||||| ||||| | |||  |||||||||||||||||| |||||    
T  6943513 aaaaattgtattggaggagggttttggagggttaatatgaattcttcaaatttaattt 6943456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 738
Target Start/End: Complemental strand, 12306 - 12255
Alignment:
Q  687 aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    |||||||||||| ||||||| ||||| | ||| |||||||||||||||||||    
T  12306 aaaaattgtattggaggaggtttttggatggtttatatgaattcttcaaatt 12255  T

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Target: scaffold0002 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 738
Target Start/End: Complemental strand, 90932 - 90881
Alignment:
Q  687 aaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    |||||||||||| ||||||| ||||| | ||| |||||||||||||||||||    
T  90932 aaaaattgtattggaggagggttttggatggtttatatgaattcttcaaatt 90881  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 738
Target Start/End: Original strand, 50587069 - 50587119
Alignment:
Q  688 aaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaatt 738  Q
    ||||||| ||| ||||||| ||||||| ||| |||||||||||||||||||    
T  50587069 aaaattgcattggaggagggttttgaagggtttatatgaattcttcaaatt 50587119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 686 - 743
Target Start/End: Complemental strand, 35604314 - 35604257
Alignment:
Q  686 caaaaattgtatttgaggaggattttgaaaggtctatatgaattcttcaaattcaatt 743  Q
    |||||||||||||  |||| ||||||||| ||| |||||||||| |||||||| ||||    
T  35604314 caaaaattgtattaaaggacgattttgaagggtttatatgaatttttcaaattaaatt 35604257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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