View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20425_low_11 (Length: 407)
Name: NF20425_low_11
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 91 - 366
Target Start/End: Original strand, 33226259 - 33226540
Alignment:
| Q |
91 |
gtctactaggagataaaatgttcattttgttaaaaataggggcgttctcaattcagtcaagtttt-----gtctac-tagctcaaatattttcttacttg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| |
|
|
| T |
33226259 |
gtctactaggagataaaatgttcattttgttaaaaataggggcgttctcaattcagtcaagtttttaagggtatatatagctcaaatattttcttacttg |
33226358 |
T |
|
| Q |
185 |
gtaatttaaaatctgcaccaatagaaatctgctttgtgatcatagtatttctcttctccctttgaaagtagctccttgctaaataacaggtgcaatatgg |
284 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33226359 |
gtaatttaaaatctgcacctatagaaatctgctttgtgatcatagtatttcttttctccctttgaaagtagctccttgctaaataacaggtgcaatatgc |
33226458 |
T |
|
| Q |
285 |
aacatacacacacatttaattagacaaatatgtataaagaagaattatttaatttaaatacattgtcggtgcaaagatgttt |
366 |
Q |
| |
|
||||||||||| |||||| || ||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
33226459 |
tacatacacacaaatttaaataaacaaatatgtataaagaagaattatttaatttacatacaatgtcggtgtaaagatgttt |
33226540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 33226681 - 33226608
Alignment:
| Q |
289 |
tacacacacatttaattagacaaatatgtataaagaagaattatttaatttaaatacattgtcggtgcaaagat |
362 |
Q |
| |
|
|||||| |||||||| |||| |||||||||||||||| ||| |||||||||| |||||||||||||| |||||| |
|
|
| T |
33226681 |
tacacatacatttaaatagataaatatgtataaagaaaaatgatttaatttatatacattgtcggtgtaaagat |
33226608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 33227027 - 33226962
Alignment:
| Q |
91 |
gtctactaggagataaaatgttcattttgttaaaaataggggc-gttctcaattcagtcaagtttt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | |||| ||||| ||||||||||| |
|
|
| T |
33227027 |
gtctactaggagataaaatgttcattttgttaaaaatacggacggttcccaatttagtcaagtttt |
33226962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 271
Target Start/End: Complemental strand, 33226837 - 33226777
Alignment:
| Q |
211 |
atctgctttgtgatcatagtatttctcttctccctttgaaagtagctccttgctaaataac |
271 |
Q |
| |
|
|||||| || |||||||||||| ||| || |||||||||| || | ||||||||||||||| |
|
|
| T |
33226837 |
atctgccttatgatcatagtatatcttttttccctttgaaggtggttccttgctaaataac |
33226777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 196 - 374
Target Start/End: Complemental strand, 10528746 - 10528570
Alignment:
| Q |
196 |
tctgcaccaatagaaatctgctttgtgatcatagtatttctcttctccctttgaaagtagctccttgctaaataacaggtgcaatatggaacatacacac |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10528746 |
tctgcaccaatagaaatctgctttgtgatcatagtatttctcttctccctttgaaagtagctccttgctaaataacaggtgcaatatggaacataca--c |
10528649 |
T |
|
| Q |
296 |
acatttaattagacaaatatgtataaagaagaattatttaatttaaatacattgtcggtgcaaagatgtttaacatccc |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10528648 |
acatttaattagacaaatatgtataaagaagaattatttaatttaaatacattgtcggtgcaaagatgtttaacttccc |
10528570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 10528251 - 10528316
Alignment:
| Q |
91 |
gtctactaggagataaaatgttcattttgttaaaaataggggc-gttctcaattcagtcaagtttt |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | |||| ||||| ||||||||||| |
|
|
| T |
10528251 |
gtctactaggagataaaatgttcattttgttaaaaatacggacggttcccaatttagtcaagtttt |
10528316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 10528442 - 10528509
Alignment:
| Q |
297 |
catttaattagacaaatatgtataaagaagaattat--ttaatttaaatacattgtcggtgcaaagat |
362 |
Q |
| |
|
||||||| | || |||||||||||||||||||| || |||||||| |||||||||||||| |||||| |
|
|
| T |
10528442 |
catttaaatggataaatatgtataaagaagaatgatgattaatttacatacattgtcggtgtaaagat |
10528509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University