View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20425_low_12 (Length: 365)
Name: NF20425_low_12
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 41487781 - 41488118
Alignment:
| Q |
19 |
gcaggtagcattggagttttgtttctgggtgtagtttaggcctagcgctttggactgtctagacttgttctgggcttctattttaggcacagtttttgtc |
118 |
Q |
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| T |
41487781 |
gcaggtagcattgaagttttgtttctgggtgtagtttaggcctagcgctttggactgtctagacttgttctgggcttctattttaggcacagtttttgtc |
41487880 |
T |
|
| Q |
119 |
ttt-gccagctgtggtgctatttgttgagtgtaggggtgcggcgctcgtctatccttttcttgtttgttggttttagcaagtcatgcgcttcttgtgtgc |
217 |
Q |
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||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41487881 |
ttttgccagctgtggtgttgtttgttgagtgtaggggtgcggcgctcgtctatccttttcttgtttgttggttttagcaagtcatgcgctacttgtgtgc |
41487980 |
T |
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| Q |
218 |
aggcgatgcattaataatagaaaaatgctaaataacacgacaagattttttcgtgctacacacgaatgcgctatttctacttgg-ttgccatatcaaaca |
316 |
Q |
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||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41487981 |
aggcgatgcattaataatagaaaaatgctaagtaacatgacaagattttttcgtgctacacacgaatgcgctatttctacttggtttgccatatcaaaca |
41488080 |
T |
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| Q |
317 |
tgtttctctctatttatgtgttgtgttttcagcttcat |
354 |
Q |
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| T |
41488081 |
cgtttctctctatttatgtgttgtgttttcagcttcat |
41488118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 236 - 354
Target Start/End: Complemental strand, 4118871 - 4118753
Alignment:
| Q |
236 |
agaaaaatgctaaataacacgacaagattttttcgtgctacacacgaatgcgctatttctacttggtt-gccatatcaaacatgtttctctctatttatg |
334 |
Q |
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| T |
4118871 |
agaaaaatgctaaataacacgacaagattttt-cgtgctacacacgaatgcactatttctacttggtttgccatatcaaacatgtttctctctatttatg |
4118773 |
T |
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| Q |
335 |
tgttgtgttttcagcttcat |
354 |
Q |
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|||||||||||||||||||| |
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| T |
4118772 |
tgttgtgttttcagcttcat |
4118753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 31713541 - 31713438
Alignment:
| Q |
251 |
aacacgacaagattttttcgtgctacacacgaatgcgctatttctacttggtt-gccatatcaaacatgtttctctctatttatgtgttgtgttttcagc |
349 |
Q |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
31713541 |
aacacgacaagattttt-cgtgctacacacgaatgcactatttctacttggtttgccatatcaaacacgtttctctttatttatgtgttgtattttcagc |
31713443 |
T |
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| Q |
350 |
ttcat |
354 |
Q |
| |
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||||| |
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| T |
31713442 |
ttcat |
31713438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 237 - 354
Target Start/End: Original strand, 50498016 - 50498133
Alignment:
| Q |
237 |
gaaaaatgctaaataacacgacaagattttttcgtgctacacacgaatgcgctatttctacttggtt-gccatatcaaacatgtttctctctatttatgt |
335 |
Q |
| |
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|||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||| |
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| T |
50498016 |
gaaaaatgctaaataacacgacaaaaatttt-cgtgctacacacgaatgcgctatttctacttggtttgtcatatcaaacacgtttctctctatttatgt |
50498114 |
T |
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| Q |
336 |
gttgtgttttcagcttcat |
354 |
Q |
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||||||||||||||||||| |
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| T |
50498115 |
gttgtgttttcagcttcat |
50498133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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