View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20425_low_14 (Length: 349)
Name: NF20425_low_14
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 8262727 - 8262666
Alignment:
| Q |
4 |
cttcagtgggatgaaaactgtcccaaaacacatattccgaatcattggaacataaaggttca |
65 |
Q |
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| T |
8262727 |
cttcagtggggtgaaaactgtcccaaaacacatattccgaatcattggaacataaaggttca |
8262666 |
T |
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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 8272029 - 8271976
Alignment:
| Q |
2 |
ggcttcagtgggatgaaaactgtcccaaaacacatattccgaatcattggaaca |
55 |
Q |
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| T |
8272029 |
ggcttctgtggggtgaaaactgtcccaaaacacatattctgaatcattggaaca |
8271976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 8270998 - 8270945
Alignment:
| Q |
276 |
aataccggtaaatttgatgtgaaatcatcatacccagcgccaccagatgcaaag |
329 |
Q |
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| T |
8270998 |
aataccagtaattttgatgtcaaatcatcatatccagcgccaccagatgcaaag |
8270945 |
T |
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