View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20425_low_15 (Length: 340)
Name: NF20425_low_15
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 47324340 - 47324641
Alignment:
| Q |
18 |
gattcaacacgtgcactttgtctctgtaatccaacaaatacacatgggaaaagtctttggagaagatcacaagcttatgatatgaaaggaatggctaaag |
117 |
Q |
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| T |
47324340 |
gattcaacacgtgcactttgtctctctaatccaacaaatacacatgggaaaagtctttggagaagatcacaagcttatgatatgaaaggaatggctaaag |
47324439 |
T |
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| Q |
118 |
agagtcttatggattgtataatgtttatgaatggttttgttaagtcaaatgagaacaagcatgttaaggtttcatatcatgctgcgaagatgttctgcaa |
217 |
Q |
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| T |
47324440 |
agagtcttatggattgtataatgtttatgaatggttttgttaagtcaaatgagaacaaacatgttaaggtttcatatcatgctgcgaagatgttctgcaa |
47324539 |
T |
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| Q |
218 |
acaaatggatgccacgtggctatttggcaatgtttgttcaaagtcaaaggtagtagacaatgttaatattccacttgtggaaaacctaccttgtgatcat |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47324540 |
acaaatggatgccacgtggctatttggcgatgtttgttcaaagtcaaaggtagtagacaatgttaatattccacttgtggaaaacctaccttgtgatcat |
47324639 |
T |
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| Q |
318 |
aa |
319 |
Q |
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|| |
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| T |
47324640 |
aa |
47324641 |
T |
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