View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20425_low_17 (Length: 336)
Name: NF20425_low_17
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 47324991 - 47324684
Alignment:
| Q |
13 |
aatatcatagtaaaagtgtacgtgattcacccttgcttaagaaacactctaaagttcaaagaaaaaagcgcaaaagccattcaaatttaaaatgagatag |
112 |
Q |
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| T |
47324991 |
aatatcatagtaaaagtgtacgtgattcacccttgcttaagaaacactctaaagttcaaagaaaaaagcgcaaaagccattcaaatttaaaatgagatag |
47324892 |
T |
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| Q |
113 |
ctatataatacactgctattcataatttcatttttcttttataacggcaaaatatattaatcaataacaggttacaggaccatatgtgttgttcaaaaat |
212 |
Q |
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| T |
47324891 |
ct-----atacactgctattcataatttcatttttcttttataacggcaaaatatattaatcaataacaggttacaggaccatatgtgttgttcaaaaat |
47324797 |
T |
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| Q |
213 |
caannnnnnnnnnnnnnnnnnnnntacctggcatggtatagataatttcatttttccttgtaattagattctacgactctagctgcaatgcnnnnnnnca |
312 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
47324796 |
caa------aataataataataattacctggcatggtatagataatttcatttttccttgtaattagattctacgactctagctgcaatgcaaaaaaaca |
47324703 |
T |
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| Q |
313 |
tgtagggcaaggacttaaa |
331 |
Q |
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| T |
47324702 |
tgtagggcaaggacttaaa |
47324684 |
T |
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