View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20425_low_20 (Length: 296)

Name: NF20425_low_20
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20425_low_20
NF20425_low_20
[»] chr2 (2 HSPs)
chr2 (67-281)||(32951028-32951239)
chr2 (80-155)||(5565774-5565848)
[»] chr4 (4 HSPs)
chr4 (67-154)||(9021086-9021172)
chr4 (72-130)||(42759519-42759577)
chr4 (67-139)||(24662605-24662676)
chr4 (97-138)||(54723694-54723735)
[»] chr7 (2 HSPs)
chr7 (82-139)||(23465858-23465915)
chr7 (72-139)||(14676386-14676453)
[»] chr3 (3 HSPs)
chr3 (73-142)||(32858986-32859055)
chr3 (67-130)||(1132802-1132864)
chr3 (72-131)||(15499165-15499224)
[»] chr8 (1 HSPs)
chr8 (72-130)||(37388435-37388493)
[»] chr1 (1 HSPs)
chr1 (88-130)||(52073297-52073339)


Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 32951028 - 32951239
Alignment:
Q  67 ctctaaaaaatttactcttttaaaagatgggaaagattttacaattttcctctatatttccaactcttcaaagcctacctttcctctctccggcaactct 166  Q
    |||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||  |||  | |    
T  32951028 ctctaaaaaagttactcttttaaaagatgtgaaagattttacaactttgctctatatttccaactcttcaaagcctacctttcctctctcttgca--tat 32951125  T
Q  167 cagacaaagcccagtagaattgtnnnnnnnnngaatataaattcaataataaatgaatatacgatatacaaatatggtgtaaattatttttcatctggtt 266  Q
    |||| |||||| |||||||||||         ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32951126 cagagaaagcctagtagaattgt-aaaaaaaagaatataaattcaatgataaatgaatatacgatatataaatatggtgtaaattatttttcatctggtt 32951224  T
Q  267 tgaaagacaattaat 281  Q
    |||||||||||||||    
T  32951225 tgaaagacaattaat 32951239  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 155
Target Start/End: Original strand, 5565774 - 5565848
Alignment:
Q  80 actcttttaaaagatgggaaagattttacaattttcctctatatttccaactcttcaaagcctacctttcctctct 155  Q
    ||||||| |||| ||| |||||||||||| |||||  |||||||||| ||||||||||||||| || || ||||||    
T  5565774 actctttcaaaaaatgtgaaagattttactattttt-tctatatttcaaactcttcaaagccttccctttctctct 5565848  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 9021086 - 9021172
Alignment:
Q  67 ctctaaaaaatttactcttttaaaagatgggaaagattttacaattttcctctatatttccaactcttcaaagcctacctttcctctc 154  Q
    |||||||||||| | |||||||||| ||| |||||||||||| ||||||| ||||||||||||| |||||||| || || ||||||||    
T  9021086 ctctaaaaaattaa-tcttttaaaaaatgtgaaagattttaccattttcccctatatttccaacccttcaaagtcttcccttcctctc 9021172  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 42759577 - 42759519
Alignment:
Q  72 aaaaatttactcttttaaaagatgggaaagattttacaattttcctctatatttccaac 130  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||||  ||||||||||||    
T  42759577 aaaaatttactctttcaaaaaatgtgaaagattttacaattttcccatatatttccaac 42759519  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 24662676 - 24662605
Alignment:
Q  67 ctctaaaaaatttactcttttaaaagatgggaaagattttacaattttcctctatatttccaactcttcaaag 139  Q
    |||||||||||| ||||||| | || ||| |||||||||||| |||||||| |||||||||||| || |||||    
T  24662676 ctctaaaaaatt-actctttcagaaaatgtgaaagattttaccattttcctatatatttccaaccctccaaag 24662605  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 54723735 - 54723694
Alignment:
Q  97 gaaagattttacaattttcctctatatttccaactcttcaaa 138  Q
    ||||||||||||||||||||  |||||||||||| |||||||    
T  54723735 gaaagattttacaattttcccttatatttccaacccttcaaa 54723694  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 23465915 - 23465858
Alignment:
Q  82 tcttttaaaagatgggaaagattttacaattttcctctatatttccaactcttcaaag 139  Q
    |||||||||| ||| |||||||||||| ||||||| ||||||||||||| ||||||||    
T  23465915 tcttttaaaaaatgtgaaagattttaccattttcccctatatttccaacccttcaaag 23465858  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 14676386 - 14676453
Alignment:
Q  72 aaaaatttactcttttaaaagatgggaaagattttacaattttcctctatatttccaactcttcaaag 139  Q
    ||||| ||||||||| |||| ||| ||||||||| || ||||||| |||||||||||| ||| |||||    
T  14676386 aaaaaattactctttcaaaaaatgtgaaagatttgaccattttcccctatatttccaaatctccaaag 14676453  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 32858986 - 32859055
Alignment:
Q  73 aaaatttactcttttaaaagatgggaaagattttacaattttcctctatatttccaactcttcaaagcct 142  Q
    |||| ||||||||| |||| ||| |||||||||||| ||||||| ||||||||||||| || ||||||||    
T  32858986 aaaaattactctttcaaaaaatgtgaaagattttaccattttcccctatatttccaaccctccaaagcct 32859055  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 1132864 - 1132802
Alignment:
Q  67 ctctaaaaaatttactcttttaaaagatgggaaagattttacaattttcctctatatttccaac 130  Q
    |||||||||||| ||||||| |||| ||| ||||||||||| |||||||| |||||||||||||    
T  1132864 ctctaaaaaatt-actctttcaaaaaatgtgaaagattttataattttccactatatttccaac 1132802  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 131
Target Start/End: Complemental strand, 15499224 - 15499165
Alignment:
Q  72 aaaaatttactcttttaaaagatgggaaagattttacaattttcctctatatttccaact 131  Q
    ||||||||||| ||| |||| ||| |||||||||||| ||||| || |||||||||||||    
T  15499224 aaaaatttactatttcaaaaaatgtgaaagattttactatttttctatatatttccaact 15499165  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 37388435 - 37388493
Alignment:
Q  72 aaaaatttactcttttaaaagatgggaaagattttacaattttcctctatatttccaac 130  Q
    ||||||||||||||| |||| ||| |||||||||||| |||||||| ||||||| ||||    
T  37388435 aaaaatttactctttcaaaaaatgtgaaagattttaccattttcctttatattttcaac 37388493  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 52073339 - 52073297
Alignment:
Q  88 aaaagatgggaaagattttacaattttcctctatatttccaac 130  Q
    |||| ||| |||||||||||||||||||| |||||||||||||    
T  52073339 aaaaaatgtgaaagattttacaattttcccctatatttccaac 52073297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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