View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20425_low_21 (Length: 293)
Name: NF20425_low_21
Description: NF20425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20425_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 4 - 280
Target Start/End: Original strand, 8405232 - 8405508
Alignment:
| Q |
4 |
tttagctctccattagtaaaaggattttacacattaccatttgttttcaaatttgttggattccaattagataagaaattttagttgaatagtattgaga |
103 |
Q |
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| T |
8405232 |
tttagctctcctttagttaaaggattttacacattaccatttgttttcaaatttgttggattccaattagataagaaattttagttgaatagtattgaga |
8405331 |
T |
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| Q |
104 |
aaaacaaacacattgagttagactaaataaaattaccaaaccaatcaatgtttgtgcttgctttgtatattggttttgtgatatttagttagactcaaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8405332 |
aaaacaaacacattgagttagactaaataaaattaccaaaccaatcaatgtttgtgcttgctttgtatattggttttgtgatatttagttagactcaaaa |
8405431 |
T |
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| Q |
204 |
tctgagatggtgttctgtacctaatatcaggtcatgcggctagttagagtgccttcgccttttaggcttgacgttct |
280 |
Q |
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| T |
8405432 |
tctgagatggtgttctgtacctaatatcaggtcacgcggctagttagagtgccttcgccttttaggcttgacgttct |
8405508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 2170311 - 2170340
Alignment:
| Q |
247 |
ttagagtgccttcgccttttaggcttgacg |
276 |
Q |
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| T |
2170311 |
ttagagtgccttcgccttttaggcttgacg |
2170340 |
T |
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